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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc03g119540.2.1 |
Common Name | LOC101254370 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
CO-like |
Protein Properties |
Length: 409aa MW: 46692.9 Da PI: 4.9222 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc03g119540.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 30.6 | 7e-10 | 17 | 60 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+ + +k++++fC ++ +lC++C +++H+ H++v
Solyc03g119540.2.1 17 ARACDSCLSKRARWFCPADDAFLCQSCDVSIHSAnqlasrHERV 60
578*****************************667888888876 PP
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2 | CCT | 67.7 | 3.1e-23 | 349 | 392 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr++R+F+KkirYe+RK +Ae+RpR+KGrF k++
Solyc03g119540.2.1 349 REARVSRYREKRQNRLFSKKIRYEVRKLNAEKRPRLKGRFIKRS 392
9****************************************987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 409 aa
Download sequence Send
to blast |
MMTSESKTAN AIGGKTARAC DSCLSKRARW FCPADDAFLC QSCDVSIHSA NQLASRHERV 60 RLETCSNKST ITKLVDKTHQ PSWHQGFTRK ARTPRNGKKA QIRQWKKNEE NRVPEIGSEE 120 NSLDENEFEN EEQLLYRVPI FDPFEAELCN VPDETGSIVD LDILLNTEDA CHDLNLPEFL 180 SSDIELAEFA ADVETLLGGE EEQSTQLLNA DFENNKAIKI EVEDEEMRAV VACHLDPELD 240 MEREALNWNF DEYYEETVEQ KVMAADAAVT EFIASAEEYS GSSTKSDEKN RLFLSLNHEA 300 VISAWPNQSS PWTNGIRPHF NPDDYWPDFF SETSVGNYGG HVRCGDGGRE ARVSRYREKR 360 QNRLFSKKIR YEVRKLNAEK RPRLKGRFIK RSSSLFSVPG FSYMMNKR*
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G68520.1 | 9e-88 | B-box type zinc finger protein with CCT domain |