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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc01g091420.1.1 |
| Common Name | LOC101256138 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
LBD |
| Protein Properties |
Length: 272aa MW: 28025.9 Da PI: 7.5992 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc01g091420.1.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 125.2 | 3.2e-39 | 40 | 140 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
+C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ ++++eA+ar+rdPvyG+v++i++lq+q+++l
Solyc01g091420.1.1 40 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVLTICFEAQARLRDPVYGCVAHIFALQHQVANL 130
7***********************9989*************************************************************** PP
DUF260 91 kaelallkee 100
+ael++l+++
Solyc01g091420.1.1 131 QAELSYLQAH 140
*****99986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010089 | Biological Process | xylem development |
| GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
| GO:0010311 | Biological Process | lateral root formation |
| GO:0005634 | Cellular Component | nucleus |
| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MSSNNHSSST GGVSAPGGGV TSGSTSSGGG SGGGGGGGGP CGACKFLRRK CVAGCIFAPY 60
FDSEQGAAHF AAVHKVFGAS NVSKLLLHIP VHKRLDAVLT ICFEAQARLR DPVYGCVAHI 120
FALQHQVANL QAELSYLQAH LTTLELPTPP PLPPPPPPPP QQPQTMLHQP SLTIADLPTA 180
GPSLPAAYDL SSLFDPMVIQ PSWAMQQQPR PPPPLPLDPR HFGGARAPMD MSPSTGGGGG 240
DLQELARELL HRHGSATVPC TESSALPPQT K*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers (PubMed:12068116). Expressed in vascular tissues of hypocotyls, leaves, roots, developing floral organs and siliques (PubMed:19088331). {ECO:0000269|PubMed:12068116, ECO:0000269|PubMed:19088331}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Rast-Somssich MI, et al.
The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
J. Exp. Bot., 2017. 68(11): p. 2741-2755
[PMID:28472464] - Liu C,Yu H,Li L
SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
PLoS Genet., 2019. 15(1): p. e1007928
[PMID:30657769]
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