PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g066500.1.1 | ||||||||
Common Name | LOC101259878 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 310aa MW: 34544.4 Da PI: 4.7524 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.7 | 1.3e-17 | 16 | 60 | 4 | 48 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 ++s r+vtfskRr+g++KKAeEL + +a++a+++fs+ g+ly+ Solyc01g066500.1.1 16 ASNSSRKVTFSKRRTGLFKKAEELATKFGARIALLVFSPAGRLYT 60 57889***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.039 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.9E-20 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.1E-17 | 6 | 64 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 8.64E-22 | 6 | 62 | No hit | No description |
PRINTS | PR00404 | 1.1E-13 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-19 | 17 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-13 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-13 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MTKGTGKKKI DIKKLASNSS RKVTFSKRRT GLFKKAEELA TKFGARIALL VFSPAGRLYT 60 SGDVSIFENN GFPSKPHLST ETASNSYVKP STLRLKNLNV EGCSEIFSPD GVHYSAGEIP 120 IVEDNLQNNG FSSNSHLSTD FSSNFYEDWS TLWLKNFKGN NEIFSPPGGF YNSGEFPIVA 180 DELKNNEFPS NSDLSIEISS NSYAKPSTLH LKNFNAEGCS EIFSTDGRFY SSNEFPIIND 240 TLKNNGFSSN SDLSTDLGSN LYEYWSMENF NVEECSSIEE LMLLKEKLEE KRDEIILKME 300 AEFIDSLLV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g066500.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC245790 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-4k9 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004229320.1 | 0.0 | myocyte-specific enhancer factor 2A-like | ||||
TrEMBL | A0A3Q7EFB1 | 0.0 | A0A3Q7EFB1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g066500.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17168 | 4 | 4 |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-11 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g066500.1.1 |
Entrez Gene | 101259878 |
Publications ? help Back to Top | |||
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