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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g065980.2.1 | ||||||||
Common Name | LOC101055565 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 28286.5 Da PI: 5.8195 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.1 | 6.7e-21 | 91 | 140 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp + r++lg+f tae+Aa+a+++a+k+++g Solyc01g065980.2.1 91 KYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTAEDAARAYDEAAKRIRG 140 8********.**********94....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.25 | 91 | 148 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-40 | 91 | 154 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 91 | 149 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.6E-14 | 91 | 140 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-33 | 91 | 148 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.95E-34 | 91 | 149 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 92 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 114 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MCGGAIISDY DPAGSFYRKL SARDLWAELD PISDYWSSSS SSSTVGKPDS ALSPVTHSVD 60 KPNKSDSGKK GNKTVKVEKE KSSGPRPRKN KYRGIRQRPW GKWAAEIRDP QKGVRVWLGT 120 FNTAEDAARA YDEAAKRIRG DKAKLNFPAP SPPAKRQCTS TVAAADTPPA LLLESSDNSP 180 LMNFGYDVQY QSQTPYYPME MPIVSEDYEL KEQISNLESF LELEPSDQFS GIVDSDPLNV 240 FLMEDFASTH HQFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-24 | 92 | 148 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.7218 | 3e-53 | callus| flower| fruit| leaf| root| stem |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g065980.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN616265 | 0.0 | Solanum lycopersicum ERF6 mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266125.1 | 0.0 | ethylene response factor | ||||
TrEMBL | H6U708 | 0.0 | H6U708_SOLLC; ERF6 | ||||
STRING | Solyc01g065980.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 5e-46 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g065980.2.1 |
Entrez Gene | 101055565 |
Publications ? help Back to Top | |||
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