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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof016213 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||
Protein Properties | Length: 189aa MW: 21169.6 Da PI: 6.5928 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.7 | 8.3e-18 | 10 | 138 | 7 | 127 |
NAM 7 FhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlskk 96 F P +el+ ++L+ k++g++l+++ + ++++diy+++P L + + k+e+++w+fF++ + k++t++rk+r+++ g+W++ ++vl+ + Sof016213 10 FTP--SELL-CFLRLKIAGEPLPATAAahFHDADIYTADPALLATlfdpapEKKGESSSWFFFTHVRPKSSTDSRKSRQVAggVGTWHSERAPRRVLDDE 106 655..4788.89*********665442249*************755778765566777********************66623678************** PP NAM 97 gelvglkktLvfy.kgrapkgektdWvmheyr 127 g+ +g + + + k ++ +e+t+W m e++ Sof016213 107 GNCTGHSQYFSYKlKIGKNCSERTEWYMLEFS 138 ************9555778889********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.353 | 2 | 163 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.27E-20 | 9 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-8 | 10 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MHPPPGDCSF TPSELLCFLR LKIAGEPLPA TAAAHFHDAD IYTADPALLA TLFDPAPEKK 60 GESSSWFFFT HVRPKSSTDS RKSRQVAGGV GTWHSERAPR RVLDDEGNCT GHSQYFSYKL 120 KIGKNCSERT EWYMLEFSDG QEADHERVHG GEPQLVLCNI YKAXYPFAPQ QRIHVDTVIL 180 CITAQEGRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.644 | 0.0 | meristem| root| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021303467.1 | 7e-99 | uncharacterized protein LOC8077939 | ||||
TrEMBL | A0A1Z5R2B4 | 3e-96 | A0A1Z5R2B4_SORBI; Uncharacterized protein | ||||
STRING | Sb09g018837.1 | 9e-97 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 1e-07 | NAC domain containing protein 61 |