PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G035100.1.p
Common NameSb10g003160, SORBIDRAFT_10g003160
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 489aa    MW: 51481.9 Da    PI: 7.28
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G035100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-14101160155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  ++ Aa+a++ a++k++g
  Sobic.010G035100.1.p 101 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEDAAARAYDLAALKYWG 160
                           789******************888855566447**********99*************98 PP
2AP251.91.8e-16203254155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Sobic.010G035100.1.p 203 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 254
                           89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-11101160IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-15101169IPR016177DNA-binding domain
SMARTSM003804.9E-23102174IPR001471AP2/ERF domain
PROSITE profilePS5103219.177102168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-14102168IPR001471AP2/ERF domain
PRINTSPR003674.1E-5103114IPR001471AP2/ERF domain
PfamPF008476.6E-12203254IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18203264IPR016177DNA-binding domain
CDDcd000186.79E-23203264No hitNo description
PROSITE profilePS5103218.953204262IPR001471AP2/ERF domain
SMARTSM003802.7E-26204268IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-18204263IPR001471AP2/ERF domain
PRINTSPR003674.1E-5244264IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
METYSLQVKD ELHGGGIGIG GGGQGLYCGA TPRPAAPAAT GGGGGGGDGA VKSNKRSRKR  60
EPPPPPPSSL VTMSNGGKDE AVAGSGDKSA SSNSNASKRS SRFRGVSRHR WTGRFEAHLW  120
DKGTWNPTQK KKGKQVYLGA YNEEDAAARA YDLAALKYWG PTTYTNFPVV DYERELKVMQ  180
NVSKEEYLAS IRRKSNGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYSTQEE  240
AARAYDIAAI EYRGINAVTN FDLSTYIRWL KPGGGVEDSA AGTPTSGVRA PGIPPASLSL  300
QAGGLLQHPH GAAAGMLQVD VDDLYRGQLA AARGAALFSG GIDDVGSVYA AGSAGPSPTA  360
LCAGRPSPSP SPSSSTTALS LLLRSSVFQE LVARNAGGGA AQQQQLVVAD DDGAVSPADV  420
VDAKVEQPEA EGELGRHGDQ LYGAARADED EDAFACSMYE LDDSFARMEQ SLWGCLRSSD  480
APDNMNNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126134PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G035100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034872e-73AP003487.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0007O20.
GenBankAP0037672e-73AP003767.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0036F10.
GenBankAP0149622e-73AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126142e-73CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304945.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLC5Z3X00.0C5Z3X0_SORBI; Uncharacterized protein
STRINGSb10g003160.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-80AP2 family protein