PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G237600.1.p
Common NameSb09g028990, SORBIDRAFT_09g028990
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 383aa    MW: 40592.3 Da    PI: 7.7728
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G237600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.82.1e-22244306163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           e+elkre+rkq+NRe+ArrsR+RK+ae+eeL++ v++L++eN++L++e+ +l++ ++kl+ e+
  Sobic.009G237600.1.p 244 ERELKREKRKQSNRESARRSRLRKQAETEELATQVESLTTENTSLRSEIGRLTESSEKLRLEN 306
                           89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.1E-28192IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1709.6E-18240303No hitNo description
SMARTSM003381.2E-22244308IPR004827Basic-leucine zipper domain
PfamPF001706.1E-21244306IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.196246309IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-11247302No hitNo description
CDDcd147021.04E-22249297No hitNo description
PROSITE patternPS000360251266IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAQDEAVATQ KTGNTASPSK DYPTPSPYPD WSTMQAYYGP GVLPPTYFAP AIAPGHPPPY  60
MWGPQPIMPP PFGTPYAAVY PHGGAYPHPL VPMMSTPLSM EPAKSANSKE KNSNKKLKEI  120
DRTAVSAGSG NSKRTMSSSE DYSAEGSSDV NDQKVNKTSR KQNSDDGPGA ETTTGANTEC  180
VLAPNHTMGN GAILPHHCFP APVIKPSATN VANSRVIGTA ISPSPSVMVP AHTALPADLS  240
VKDERELKRE KRKQSNRESA RRSRLRKQAE TEELATQVES LTTENTSLRS EIGRLTESSE  300
KLRLENSALM VKLKDTAALT PAEPSPHTAV TSSSSPGAAA ENFLSMIDSA KAAGVSRHTE  360
HGEPKLRQLL DSSPATDVAA VS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260266RRSRLRK
2260267RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.106070.0leaf| ovary
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G237600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0336250.0BT033625.1 Zea mays full-length cDNA clone ZM_BFc0117G20 mRNA, complete cds.
GenBankBT0627840.0BT062784.1 Zea mays full-length cDNA clone ZM_BFb0346H09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440282.10.0common plant regulatory factor 1 isoform X1
TrEMBLC5YVZ30.0C5YVZ3_SORBI; Uncharacterized protein
STRINGSb09g028990.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-46G-box binding factor 3