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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G111200.1.p | ||||||||
Common Name | Sb09g017950, SORBIDRAFT_09g017950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 20488.7 Da PI: 5.1343 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.7e-20 | 53 | 102 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+G+r+++ +grW+AeIrdp++ +r++lg++ t+e+Aa+a++aa+++++g+ Sobic.009G111200.1.p 53 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATPEDAARAYDAAAREIRGA 102 9*******.**********954...4*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-31 | 52 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-34 | 52 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.645 | 52 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-22 | 52 | 110 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.1E-14 | 52 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 53 | 64 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.12E-17 | 53 | 108 | No hit | No description |
PRINTS | PR00367 | 1.6E-10 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MCGGAIIADF VPAGGRRQAT DDTISASSLL SGEDQHLEEL GSRVPAPGRK TAYRGIRRRP 60 WGRWAAEIRD PRKGARVWLG TYATPEDAAR AYDAAAREIR GAKAKLNFPP AVGAGAGAGA 120 REPAAKRRRT SSSAAAEESS GSSPAATTTV VAGVGGGGGG EETLRDCMSG LEAFLGLQEE 180 AADEGGDAEA WDAVDLMFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 53 | 115 | 6 | 69 | ATERF1 |
3gcc_A | 2e-21 | 53 | 115 | 6 | 69 | ATERF1 |
5wx9_A | 2e-21 | 53 | 118 | 15 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G111200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002439648.1 | 1e-137 | ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | C5YWT9 | 1e-136 | C5YWT9_SORBI; Uncharacterized protein | ||||
STRING | Sb09g017950.1 | 1e-137 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 3e-26 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G111200.1.p |
Entrez Gene | 8061915 |