PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G101400.4.p
Common NameDREB2
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 336aa    MW: 36087.2 Da    PI: 4.828
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G101400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64e-2082132155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +gy+GVr++  +g+WvAeIr+p   + r  r +lg+f tae+Aa+a+++a+++++g
  Sobic.009G101400.4.p  82 CGYRGVRQRT-WGKWVAEIREP---N-RvNRLWLGTFPTAEDAARAYDEAARAMYG 132
                           79*****999.**********8...2.489**********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.63E-3082140No hitNo description
PfamPF008471.7E-1382132IPR001471AP2/ERF domain
SMARTSM003802.9E-3383146IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2183141IPR016177DNA-binding domain
PROSITE profilePS5103222.61683140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-3284141IPR001471AP2/ERF domain
PRINTSPR003671.2E-108495IPR001471AP2/ERF domain
PRINTSPR003671.2E-10106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTLDQNQATP MQPPALQPGR KKRPRRSRDG PTSVAAVIQQ WAEHNKQLEY APEGSKRPRK  60
APAKGSKKGC MRGKGGPDNT QCGYRGVRQR TWGKWVAEIR EPNRVNRLWL GTFPTAEDAA  120
RAYDEAARAM YGDLARTNFP RPHAATYAQA ALVSTSSQAA PMAVGALWPG TSCESTTTSN  180
HSDIASTSHK PEASDSSSSL KAEWPEALEA GSSCIQAGTP SVADKVFGTL EPITKLPDGG  240
VTNLPDGGVI NLPDGGDDCF DIGEMLSMME ADPHNEGGAD VGMGQPWCLD GLDSSVLESM  300
LQSEPEPFLM SEEQEMFLAG FESPSSFFED LERLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1584140663ATERF1
3gcc_A3e-1584140663ATERF1
5wx9_A4e-15841431575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.116490.0callus| leaf| panicle| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G101400.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9158390.0JF915839.1 Sorghum bicolor dehydration responsive element binding protein 2 isoform a (DREB2) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302434.10.0dehydration-responsive element-binding protein 2B-like isoform X4
SwissprotQ5W6R41e-80DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLJ7FAA80.0J7FAA8_SORBI; Dehydration responsive element binding protein 2 isoform a
STRINGSb09g016150.20.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.16e-35ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]