PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G073800.3.p
Common NameSb09g006220, SORBIDRAFT_09g006220
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 309aa    MW: 34527.4 Da    PI: 7.1786
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G073800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.6e-14226271555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h   Er+RR++iN++f+ Lr  lP++      K +K +iL +A +YI+sLq
  Sobic.009G073800.3.p 226 HLLSERKRREKINDSFDALRNALPPS-----SKRDKTSILMRARDYINSLQ 271
                           6678********************98.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-18219286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.97E-14223275No hitNo description
Gene3DG3DSA:4.10.280.102.0E-16225287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11226271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-14227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDGCSWPPSP SIGGARAVFS GDMPWHKASN SSCDDSDHLH SQREEQDVVV SSQQLQQQLQ  60
QIYALLDMEQ EHELHLHHAV PPQSPSQHQW SSSPSSSSLV LSASSATTAF CQQPAQASSL  120
DTPFSPFPYG YLETIPNLNR EEIMSQARHK DGSGTSAFRQ YVRHLHPKKK LKQGACGQRA  180
IKTAMSVLVK MHSARLSQRQ RQSSRTEMAA PAVPSSDESN NIQLQHLLSE RKRREKINDS  240
FDALRNALPP SSKRDKTSIL MRARDYINSL QSRVSELEEK GMALESQLCI DYGYEQDVNG  300
YPEKIEQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166172PKKKLKQ
2229234ERKRRE
3230235RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G073800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302888.10.0transcription factor BHLH148 isoform X1
TrEMBLC5YUF50.0C5YUF5_SORBI; Uncharacterized protein
STRINGSb09g006220.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-17bHLH family protein