PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G034800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 568aa    MW: 58464.1 Da    PI: 6.1235
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G034800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.1e-30287345259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed+ v+++tYeg+Hnh+
  Sobic.009G034800.1.p 287 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDKAVLITTYEGTHNHQ 345
                           7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-33271347IPR003657WRKY domain
SuperFamilySSF1182901.16E-27279347IPR003657WRKY domain
PROSITE profilePS5081129.321281347IPR003657WRKY domain
SMARTSM007741.7E-36286346IPR003657WRKY domain
PfamPF031061.6E-26288345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MDLVPKQQQQ QRSKEKQEEE EEMMMALAEH GDRPQAAAFG HGGGGGGGRR SEIKEVDFFS  60
TAGGAARRRT DDDDDGDREE AAAGALARGC HNTTVNTALD LLTTRAAAAA ATPAAVDGGE  120
GTASGRDTEV PIVDVAATAA VEGELRQASE ENRRLRRMLE ELTRSYGALY HQLIQAQAQQ  180
QQQQACSGGA ANPMLPAATT TGVQFMDHAG RVAPAIAGEA APPAFSGDRG DSDDGSGGNG  240
GEADQNDGMK TPERGENVDR SPAAAAEAPL RRARVSVRAR SEAPMISDGC QWRKYGQKMA  300
KGNPCPRAYY RCTMATGCPV RKQVQRCAED KAVLITTYEG THNHQLPPAA AAMAKTTSAA  360
AAMLLSGPAV SRDVGALFAG HHVAAPAPLF QYHHPYASAM AGATLSASAP FPTITLDLTH  420
APSPGAAAAA AAAAGLLQQR QLMPPPVPTM TPFPMYGFTA AAGHRPVPPP QPPAATTLFG  480
LDGSNRSALE TMTAAITNDP NFTTVVAAAL STIMAGGAEP PVPRSGAADA GDGSNGSVGI  540
EPATAAAAGA RENALHALLQ RLHDSRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-23273349176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G034800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440550.20.0probable WRKY transcription factor 31 isoform X1
TrEMBLA0A1B6P6B90.0A0A1B6P6B9_SORBI; Uncharacterized protein
STRINGPavir.J02788.1.p1e-174(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.14e-49WRKY family protein