PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G191800.1.p
Common NameSb08g023200, SORBIDRAFT_08g023200
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 298aa    MW: 31728.8 Da    PI: 8.6441
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G191800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-1614107198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           ffkvl     + +  l+lp kfa++ g         +l+d +grsW+v+l+ +   + ++ ++GW++Fv+an + +g  +vF++  r +
  Sobic.008G191800.1.p  14 FFKVL--LPGSFEISLSLPPKFAASLGVLRSWRAAAKLRDHTGRSWDVELRRDAAHRVCFTGGGWRGFVSANAVSAGQLLVFEH--RGG 98 
                           78888..444445559*********9555556679***************877787779999*********************6..467 PP

                           E..EEEEE- CS
                    B3  90 felvvkvfr 98 
                           f ++v  f+
  Sobic.008G191800.1.p  99 FDFTVDRFD 107
                           777887776 PP
2B332.41.6e-101962691583
                           -EE--HHH.HTT---..--SEEEEEETTS.........-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3  15 rlvlpkkfaeehggkkeesktltledesg.........rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           +l l+k+f+++ g    +s++++l              ++W+v +  + + +  ++ +GW eF+++n+L + D ++F 
  Sobic.008G191800.1.p 196 ILALSKSFCDRVGWT--SSRDVVLCAAGDgvsgsrkeeKRWQVSV--KMSAKNAMICAGWTEFAQDNRLAVSDACIFV 269
                           678899999888755..555677666433477788888*******..99999999**********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.02E-1911111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-1911111IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-1514109IPR003340B3 DNA binding domain
PfamPF023624.6E-1414107IPR003340B3 DNA binding domain
CDDcd100179.45E-1914107No hitNo description
PROSITE profilePS5086312.43527109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-13180288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-10189287IPR015300DNA-binding pseudobarrel domain
CDDcd100175.32E-7197288No hitNo description
PROSITE profilePS508639.756197290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MASHGGGGGG PHKFFKVLLP GSFEISLSLP PKFAASLGVL RSWRAAAKLR DHTGRSWDVE  60
LRRDAAHRVC FTGGGWRGFV SANAVSAGQL LVFEHRGGFD FTVDRFDASG CCCEDGGGPI  120
NKVVDEHMTT RGTEAAADKE SGNSRRRPEA APAPCTSGVK RRRRSPSTGT GTTVVSGGDD  180
DETLCCRIER PYQLRILALS KSFCDRVGWT SSRDVVLCAA GDGVSGSRKE EKRWQVSVKM  240
SAKNAMICAG WTEFAQDNRL AVSDACIFVP LPAPASGSDD VLQVHLLRGT PVAASWT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144163RRRPEAAPAPCTSGVKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G191800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443670.10.0B3 domain-containing protein Os03g0212300
TrEMBLC5YT370.0C5YT37_SORBI; Uncharacterized protein
STRINGSb08g023200.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP168021012
Representative plantOGRP1612033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-10B3 family protein