PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G092300.4.p
Common NameSb08g012360, SORBIDRAFT_08g012360
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 515aa    MW: 55754.7 Da    PI: 7.4646
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G092300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.6e-11105130126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ++++ C++++++GtC++G +CkF+H+
  Sobic.008G092300.4.p 105 PGEPDCSYYLKFGTCRFGIKCKFNHP 130
                           5789*********************8 PP
2zf-CCCH27.36.4e-09225247325
                           S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                           +e+C++++ +G Ck+G  Ck+ H
  Sobic.008G092300.4.p 225 QEECKYYSTSGGCKFGKACKYLH 247
                           589******************** PP
3zf-CCCH33.38e-11272296226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           ++++C++++rtG Ck+  +CkF+H+
  Sobic.008G092300.4.p 272 GEKECPYYMRTGSCKFATNCKFHHP 296
                           7899********************9 PP
4zf-CCCH22.52e-07418444127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C++f ++G+Cky  +C+F+H++
  Sobic.008G092300.4.p 418 PGQPECQHFIKSGFCKYRMKCRFHHPR 444
                           5789*********************96 PP
5zf-CCCH24.83.7e-08464489227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +++ C ++ r+G+CkyG+ C F+H++
  Sobic.008G092300.4.p 464 DQPVCTYYGRYGFCKYGPACMFNHPF 489
                           6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.2E-5104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774104132IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-8106130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-5109132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.84222250IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-4222249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5226250IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-6226247IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5228249IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5270297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793270298IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7272296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5273297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4276295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807417445IPR000571Zinc finger, CCCH-type
SMARTSM003560.11417444IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-5421445IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483462490IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-4462489IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5463490IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-6464489IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MADADAKPPP PDAAASPVPS ISPSSVGAGN AVDADAIEKQ LAGLGIAVAG NGGGFPEPSG  60
WDDGPVPVRI PAAVLVGRDE GADEKPPAPA PTGAVDVKLR FPRRPGEPDC SYYLKFGTCR  120
FGIKCKFNHP ARKKKSSRVR GSGSNSSSNK ASSPDDDQAP REEYEGLVPD ISDSMGFDDK  180
GSLSSSEIYR KMSYEVIDME RGKLEPKEKG AKDKRKETFA EGNAQEECKY YSTSGGCKFG  240
KACKYLHREG KEAKTEVEKA ELNFLGLPLR PGEKECPYYM RTGSCKFATN CKFHHPDPTN  300
ASSKEPGLEH ENADTPLQNV QGSCQPSLQI WPDHRTLNEQ HVPFLAPAQS YGGGMVPPQG  360
MYPSPDWSGY HQVPLNPYYP PGVPFPHFPA AHMNHPMYKA ADVPGNQPPP SDEYPERPGQ  420
PECQHFIKSG FCKYRMKCRF HHPRSGQSAP LTGLSPIGLP IKPDQPVCTY YGRYGFCKYG  480
PACMFNHPFN FGPPVPAAGP PLPGQYPTPG NFTV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.97370.0leaf| panicle| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G092300.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0392340.0BT039234.1 Zea mays full-length cDNA clone ZM_BFc0001O03 mRNA, complete cds.
GenBankEU9698660.0EU969866.1 Zea mays clone 336566 zinc finger CCCH type domain-containing protein ZFN-like 6 mRNA, complete cds.
GenBankJX4284720.0JX428472.1 Zea mays subsp. mays clone pUT3068 C3H54 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302232.10.0zinc finger CCCH domain-containing protein 65 isoform X2
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A1Z5R5M50.0A0A1Z5R5M5_SORBI; Uncharacterized protein
STRINGSb08g012360.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.15e-54C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]