PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G147300.1.p
Common NameSb07g022180, SORBIDRAFT_07g022180
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 372aa    MW: 41633 Da    PI: 6.025
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G147300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-18107157256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            y+G+r+++ +g+W+AeIrdp +     r++lg++ t+e+Aa+a++a ++k++g+
  Sobic.007G147300.1.p 107 PYRGIRQRP-WGKWAAEIRDPAK---GVRVWLGTYRTPEDAARAYDAEARKIRGN 157
                           7********.**********843...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.156107164IPR001471AP2/ERF domain
SMARTSM003808.9E-37107170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-31108165IPR001471AP2/ERF domain
PRINTSPR003672.1E-10108119IPR001471AP2/ERF domain
CDDcd000181.89E-31108165No hitNo description
PfamPF008471.1E-10108156IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-21108165IPR016177DNA-binding domain
PRINTSPR003672.1E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGQETFEDNK MKNYGERKLK RAHKIDEGED DFEADFQAFS KKCDEEDESH YKFMALLPFK  60
EGLTSVSTPT EGKVRLDFPM KDDVISREPT TTNEGTSVRP KRKRKTPYRG IRQRPWGKWA  120
AEIRDPAKGV RVWLGTYRTP EDAARAYDAE ARKIRGNKAK VNFPNEGPPN MVSNTPKLTA  180
TAMTTMDIPA EKMNTDELVC HTNYSNEDML SMANFSGNNA SLISAQAFGL HYMKKPRVPY  240
DIPSMGECSN QNKITYGSSN GLGIEASRNL NGCSFLPQVG MPMFIQPTFD GPSRMIERND  300
VVISPTLTNA TPITPLGVAG VDVAKKMNKH PILQEMENEA TPILQGDVSE DVAAEISMWE  360
FYDHLLDNKQ N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-22108164360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G147300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444457.10.0ethylene-responsive transcription factor RAP2-2
TrEMBLC5YLS80.0C5YLS8_SORBI; Uncharacterized protein
STRINGSb07g022180.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP168501012
Representative plantOGRP1989522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.15e-26ERF family protein