PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G107400.1.p
Common NameSb07g015070, SORBIDRAFT_07g015070
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 198aa    MW: 21563.3 Da    PI: 6.5082
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G107400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.8e-12350253
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                          +++GV+  ++ grW+Ae r       ++r+++g+f t++eA++a++ + +++
  Sobic.007G107400.1.p  3 RCRGVY-ERQPGRWAAEFRSH---RLKARHWIGTFATEDEAKAAYDDFERQF 50
                          79***8.777*******5553...245**********99*******998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.103361IPR001471AP2/ERF domain
SMARTSM003804.9E-4365IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-11352IPR016177DNA-binding domain
PfamPF008473.8E-8446IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-12550IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MKRCRGVYER QPGRWAAEFR SHRLKARHWI GTFATEDEAK AAYDDFERQF FPARRCGLPV  60
PLPALERGGG RAAGGVQRAS NPHRQRHPHP PDKRQIVLAL AATGIMLPPL PSAPASAPCI  120
SNPTSATPQR PLVPPPPFEN NAEPHGDAVP SVHSFWADEP ADEDLIGLAD LGHLPLPFSD  180
GSMDFDPDDL SLFDGFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G107400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974648.16e-64dehydration-responsive element-binding protein 1E
TrEMBLA0A1B6PH911e-140A0A1B6PH91_SORBI; Uncharacterized protein
STRINGSb07g015070.11e-142(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140032023
Representative plantOGRP1702133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.17e-10ERF family protein