PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G028700.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | LSD | ||||||||
Protein Properties | Length: 161aa MW: 16960.4 Da PI: 9.2038 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 29 | 1.7e-09 | 7 | 30 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 CggC+ lL+Y rGA+ V+C+ C+t Sobic.007G028700.3.p 7 CGGCKRLLQYRRGATGVCCPTCNT 30 ***********************9 PP | |||||||
2 | zf-LSD1 | 31.9 | 2.2e-10 | 85 | 107 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 Cg+Crt+L+YP+GA+ V C+ C Sobic.007G028700.3.p 85 CGQCRTTLAYPPGATTVGCPTCR 107 **********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.7E-9 | 4 | 32 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.6E-8 | 7 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 9.2E-6 | 44 | 68 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.1E-6 | 46 | 67 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.30.40.10 | 7.5E-4 | 60 | 111 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
TIGRFAMs | TIGR01053 | 2.0E-8 | 82 | 111 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.8E-10 | 85 | 108 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MHSQLVCGGC KRLLQYRRGA TGVCCPTCNT FTAANPSGPE MSELVCGGCF TMLVHSRSAT 60 NIRCPHCSRL NSTRSAGNQM GHLSCGQCRT TLAYPPGATT VGCPTCRNIN PVRNNHTGGS 120 ARPAPSDARP QTVLVENPKT LDEKGKLVSN VAVGVTSWKR * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G028700.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319997.1 | 1e-114 | protein LOL4 isoform X1 | ||||
Refseq | XP_021319998.1 | 1e-114 | protein LOL4 isoform X1 | ||||
Swissprot | Q84UR0 | 2e-70 | LOL4_ORYSJ; Protein LOL4 | ||||
TrEMBL | A0A1Z5R7R9 | 1e-113 | A0A1Z5R7R9_SORBI; Uncharacterized protein | ||||
STRING | Si014280m | 1e-96 | (Setaria italica) | ||||
STRING | Sb07g002500.1 | 9e-98 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12333 | 29 | 38 | Representative plant | OGRP1146 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 7e-37 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G028700.3.p |
Publications ? help Back to Top | |||
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