PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G168200.1.p
Common NameSb06g024390, SORBIDRAFT_06g024390
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 286aa    MW: 30704.5 Da    PI: 6.5632
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G168200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-2075124254
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                           +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++
  Sobic.006G168200.1.p  75 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPIEAARAYDRAAFRMH 124
                           8********.**********96554..************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-2874131IPR001471AP2/ERF domain
PfamPF008471.9E-1475124IPR001471AP2/ERF domain
CDDcd000181.10E-2575132No hitNo description
SMARTSM003801.9E-3175136IPR001471AP2/ERF domain
PROSITE profilePS5103220.63975130IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1975131IPR016177DNA-binding domain
PRINTSPR003675.2E-107687IPR001471AP2/ERF domain
PRINTSPR003675.2E-1099115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MPFLPPPWTQ QQGYIGMDPS PTNEYMGEAA AAPPPVRQPL TVPLRPYASA AATAASAVEQ  60
LAAAATPEAV EDLRKYRGVR QRPWGKYAAE IRDPKRRGSR VWLGTYDTPI EAARAYDRAA  120
FRMHAILNFP NDVGTRGADF WAPPPPAPAK SKNAATAPAT ATNKRKRQQL LVVEDPDDDD  180
VEVIAVVKKE VKIVVEVPAY SSSSQVQVYS ASRSSSMSTR ETTATASSTV TSSPAEETGS  240
GAVEFPMTPS SGNWEQYWEA LLGTLPLLSP QSPHPALGFP QLTVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-22751321474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G168200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319691.12e-98ethylene-responsive transcription factor ERF104
TrEMBLC5YDF00.0C5YDF0_SORBI; Uncharacterized protein
STRINGSb06g024390.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-28ethylene responsive element binding factor 5