PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G167800.4.p | ||||||||
Common Name | Sb06g024355, SORBIDRAFT_06g024355 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 294aa MW: 30959.5 Da PI: 5.3959 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.7e-20 | 137 | 187 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+++tae+Aa a+++a+ +++g Sobic.006G167800.4.p 137 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYDTAEDAALAYDRAAYRMRG 187 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.49E-30 | 136 | 195 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.7E-32 | 136 | 195 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-38 | 137 | 201 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-23 | 137 | 197 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-14 | 137 | 187 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.25 | 137 | 195 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-11 | 138 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-11 | 161 | 177 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MLLNPASEAL VLDTIRQHLL EEPAAAAAGD ESFGSLVADQ WSGSLPFRTD DADDMVVFGA 60 LQDAFAYGWL PDGSFAHVKP EPALSPDSHS YSYSYDGSSC CFGGLLLDPA EPLTPSSEAA 120 ATPRREAAAA AVARGKHYRG VRQRPWGKFA AEIRDPAKNG ARVWLGTYDT AEDAALAYDR 180 AAYRMRGSRA LLNFPLRIGS EIAAAATAGD KRPSPEPATS SSDSSFSSCS STTSSSSTSG 240 SPKRRKRGEA AAANMAMALV PPPSQLNRPA QPWFPAAPVE QAAMAPRVEQ LVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-39 | 133 | 200 | 1 | 68 | ATERF1 |
3gcc_A | 1e-39 | 133 | 200 | 1 | 68 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.12534 | 0.0 | embryo| leaf| ovary |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00548 | DAP | Transfer from AT5G47220 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G167800.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727518 | 0.0 | KJ727518.1 Zea mays clone pUT5377 AP2-EREBP transcription factor (EREB198) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448280.1 | 0.0 | ethylene-responsive transcription factor 2 | ||||
Swissprot | Q40479 | 2e-56 | ERF2_TOBAC; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | C5YDE6 | 0.0 | C5YDE6_SORBI; Uncharacterized protein | ||||
STRING | Sb06g024355.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 5e-34 | ethylene responsive element binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G167800.4.p |
Entrez Gene | 8055956 |
Publications ? help Back to Top | |||
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