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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sobic.006G080200.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
ERF |
| Protein Properties |
Length: 290aa MW: 29659.8 Da PI: 9.1056 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.006G080200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 64.8 | 1.8e-20 | 114 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+W+AeIrdp + +r++lg+f tae+Aa+a++aa+++++g
Sobic.006G080200.1.p 114 KYRGVRRRP-WGKWAAEIRDP-----HkaARVWLGTFATAEDAARAYDAAALRYRG 163
8********.**********7.....337*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MPCGFMLGTR TMQQHTPTPT TMGCSEQSLA AETAAIVSAL THVVASGRGG PPRQAPPLVM 60
PIPWRRRADD DDGGGSAAAH HHHHGQQLVA VAGAAAAQAQ GTGTAAVAPA PARKYRGVRR 120
RPWGKWAAEI RDPHKAARVW LGTFATAEDA ARAYDAAALR YRGGRAKLNF PDAAAARRAR 180
DAEAASAAAR AGPPAALLES QSQQAAAGDD DMADYIDYSR ILEAAEPSGI MDGLFGGHGN 240
GRFLGSWSIG TSPPSSSGSG ASLAGAASSA SLFHQTDGGK QSSNNSGDY*
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK107125 | 2e-59 | AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence. |
| GenBank | AL713902 | 2e-59 | AL713902.2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AL844874 | 2e-59 | AL844874.1 Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AP014968 | 2e-59 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012620 | 2e-59 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
| GenBank | CU406355 | 2e-59 | CU406355.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109D06, full insert sequence. |
