PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G095800.1.p
Common NameSb05g008290, SORBIDRAFT_05g008290
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 281aa    MW: 30830.3 Da    PI: 6.5085
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G095800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.13.3e-141363149
                   NAM  1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpk 49
                          lppGfrFhP+d+el+ eyL++kv gk  ++ ++  + +vd++kvePwdLp+
  Sobic.005G095800.1.p 13 LPPGFRFHPRDDELIREYLAPKVFGKIgFSGHRPpMVDVDLNKVEPWDLPT 63
                          79***********************9876665666**************94 PP
2NAM50.56.9e-166310585128
                   NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +tgkd+ v + +g lvg++ktLvfy+grapkg+kt+Wvmheyr+
  Sobic.005G095800.1.p  63 TTGKDRVVEC-HGMLVGMRKTLVFYNGRAPKGSKTEWVMHEYRM 105
                           5999999999.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.1451130IPR003441NAC domain
SuperFamilySSF1019411.12E-373130IPR003441NAC domain
PfamPF023659.6E-1514105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSMSFVCMVE AELPPGFRFH PRDDELIREY LAPKVFGKIG FSGHRPPMVD VDLNKVEPWD  60
LPTTGKDRVV ECHGMLVGMR KTLVFYNGRA PKGSKTEWVM HEYRMMEGSH YQQSSNLSKE  120
DWVLCKVICK KKPGVANFKA SRSLATDGHG TTTASTPPPL QTLMGITLTQ VQAAMAMPRA  180
SLKTTTANSH VQEEIRGTLQ NGASNNIVVD GVQQPSYLPV IADDNNAKGQ PDEMGSYTDP  240
VNCEKDLLTV LLSDLGGEVV PSLPPEMAAS MSSTWMMNHF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-27813115169NAC domain-containing protein 19
3swm_B6e-27813115169NAC domain-containing protein 19
3swm_C6e-27813115169NAC domain-containing protein 19
3swm_D6e-27813115169NAC domain-containing protein 19
3swp_A6e-27813115169NAC domain-containing protein 19
3swp_B6e-27813115169NAC domain-containing protein 19
3swp_C6e-27813115169NAC domain-containing protein 19
3swp_D6e-27813115169NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G095800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828624.11e-108NAC domain-containing protein 21/22-like
SwissprotQ84TE61e-41NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1B6PRA90.0A0A1B6PRA9_SORBI; Uncharacterized protein
STRINGSb05g008290.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100223144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.26e-44NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]