PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G041000.1.p
Common NameSb05g003400, SORBIDRAFT_05g003400
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 343aa    MW: 36815.8 Da    PI: 6.446
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G041000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.41.3e-40351721128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                           l+pGfrF Pt+eel+++yL+++++g++  +e+ i+ vdiy+++P++L++    +  ++ ++w+fF++r++++ +g r+ r+t sgyWka
  Sobic.005G041000.1.p  35 LAPGFRFYPTEEELLTFYLRHRLAGTRPVVEHLIPVVDIYSYHPSELRAmagaASVSDPEQWFFFCPRAERELHGGRPARTTPSGYWKA 123
                           579************************999888**************8434432223566***************************** PP

                   NAM  86 tgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           tg+   v+s+      +++++g k+t+vfy+grap+g+kt W m+ey++
  Sobic.005G041000.1.p 124 TGSPSYVYSSsssptaNNRVIGEKRTMVFYQGRAPTGNKTPWKMNEYKA 172
                           *********98888887888***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-4533201IPR003441NAC domain
PROSITE profilePS5100546.74735202IPR003441NAC domain
PfamPF023658.9E-2237171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MRTNGDRGWP AMMMESHGGS GGGGGGGGGG SDPLLAPGFR FYPTEEELLT FYLRHRLAGT  60
RPVVEHLIPV VDIYSYHPSE LRAMAGAASV SDPEQWFFFC PRAERELHGG RPARTTPSGY  120
WKATGSPSYV YSSSSSPTAN NRVIGEKRTM VFYQGRAPTG NKTPWKMNEY KAVADADADD  180
HAPAGAPIML RNEFSVCRVY ISTGTLRSFD RRPHPPSGGL AAVHCGYQRQ QQLQPLLPPP  240
AAAAAAAKTT SLHNQQQTMM LAAVVVDDDS AADNNGRRRH AVEHSHDSSS SGSRGVGGGV  300
DGAEDAATAI DWDWNSLIPP VDDDDLAFTG VDDLTRVIWP HN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-26312009163NO APICAL MERISTEM PROTEIN
1ut4_B1e-26312009163NO APICAL MERISTEM PROTEIN
1ut7_A1e-26312009163NO APICAL MERISTEM PROTEIN
1ut7_B1e-26312009163NO APICAL MERISTEM PROTEIN
4dul_A1e-26312009163NAC domain-containing protein 19
4dul_B1e-26312009163NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11930SGGGGGGGGGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G041000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449015.20.0NAC domain-containing protein 2
SwissprotQ9FMR37e-62NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A1B6PQ360.0A0A1B6PQ36_SORBI; Uncharacterized protein
STRINGSb05g003400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Representative plantOGRP22781136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.24e-59NAC domain containing protein 61
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]