PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G321300.1.p
Common NameSb04g035160, SORBIDRAFT_04g035160
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 369aa    MW: 40090.2 Da    PI: 4.5615
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G321300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-18114163255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+G+r ++ +g+W+AeIrdp     +  r++lg+f ++eeAa+a++a +++++g
  Sobic.004G321300.1.p 114 QYRGIRKRP-WGKWAAEIRDPQ----KgVRVWLGTFNSPEEAARAYDAEARRIRG 163
                           69*******.**********94....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-21114172IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-31114172IPR001471AP2/ERF domain
CDDcd000184.81E-31114173No hitNo description
SMARTSM003801.1E-34114177IPR001471AP2/ERF domain
PROSITE profilePS5103223.802114171IPR001471AP2/ERF domain
PfamPF008473.8E-11115163IPR001471AP2/ERF domain
PRINTSPR003671.6E-10115126IPR001471AP2/ERF domain
PRINTSPR003671.6E-10137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MCGGAILDDL REPELRRVTD RDIWQKKKPK RGGGGGRRSF AAEDHEDFEA DFADFEADSG  60
DSDLELGEGA DDDVVEIKPF AAKGTFSGDG LSTMTTADYD APVARSAKRK RKNQYRGIRK  120
RPWGKWAAEI RDPQKGVRVW LGTFNSPEEA ARAYDAEARR IRGKKAKVNF PDAPAVGQKR  180
RSGSASAKAP KSSVEQKPVV KAPMTNLANT NASFYQSVNY PSNNPFVQHA NMPFVPAMNF  240
TASVEDPIMN LHSDQGSNSF GCSDLAWEND TKTPDITSIA PISTIAEGDE SAFVNSNSNS  300
SMLPPVLENS AVDFTDGLTD LESYMRFLLD GGASDSVDSL LNLDGSQDVG SNMDLWSFDD  360
MPIAGDFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18113171463ATERF1
3gcc_A1e-18113171463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107121KRKRKNQYRGIRKRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.10850.0callus| root| shoot
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G321300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0432700.0BT043270.1 Zea mays full-length cDNA clone ZM_BFc0138G02 mRNA, complete cds.
GenBankKJ7275910.0KJ727591.1 Zea mays clone pUT5451 AP2-EREBP transcription factor (EREB90) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454666.10.0ethylene-responsive transcription factor 1
SwissprotQ6K7E61e-162ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLC5XTP70.0C5XTP7_SORBI; Uncharacterized protein
STRINGSb04g035160.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.32e-37related to AP2 2
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]