PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G094600.5.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 507aa    MW: 53623.4 Da    PI: 10.2791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G094600.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11271314452
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                           +h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ +Y++
  Sobic.004G094600.5.p 271 NHMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLAKTLDYMN 314
                           78999********************95.....599************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.567267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-16268342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-15270336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9271314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-12273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-5282321No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MLQEAGIKMA AFMGCESGEI EIGMSTAASS GGSPMSLEST LHQVFSEDFF QQSLLEELLQ  60
LPPTRPSSPS SSVPSVSVGS PPAADVISTS LQRTVAVTPA PSSVGRHQAP PPVARPPPPP  120
HPRPPPLPFV RHGGPGHVCF PSAEADDAAM AQAMLDVISA SSSSALPTPP STAPPPPPGN  180
HHRARRRWTA ATAFRAYNAA LAPRTPWRPP GAPAGQRMIK MGISILRRMH MLRFSRERTA  240
GGTTTTTMVQ RGQEGDDDPS SPAVPSSSQL NHMISERRRR ERLNESFEAL RGLLPPGSKK  300
DKATVLAKTL DYMNILVAQI ADLEARNRSL ESRAHHHHHR HANGGSSSLE QRVVVLQQGL  360
MSGTGTSSSE RVQVHVTTAG DDSGASTSSS PAAGRREVVT VRVHARAAQG DVAELVARAL  420
AVIKDMGCFT VVAVDAAGRP SDAGGGSHVA EATFTLRATG GCGQSCRGFR DTTVERFVDG  480
RRRIDDRAWA PTSTDLGMNG WMRTSP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G094600.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451784.20.0putative transcription factor bHLH041
TrEMBLA0A1Z5RLM30.0A0A1Z5RLM3_SORBI; Uncharacterized protein
TrEMBLA0A1Z5RM630.0A0A1Z5RM63_SORBI; Uncharacterized protein
STRINGSb04g007795.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-13bHLH family protein