PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G094600.4.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 534aa    MW: 56660.1 Da    PI: 10.1614
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G094600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-11298341452
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                           +h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ +Y++
  Sobic.004G094600.4.p 298 NHMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLAKTLDYMN 341
                           78999********************95.....599************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.567294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-16295369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-15297363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9298341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-12300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-5309348No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MLLLVSIASL HPRISPDELA FYSRLLVMLQ EAGIKMAAFM GCESGEIEIG MSTAASSGGS  60
PMSLESTLHQ VFSEDFFQQS LLEELLQLPP TRPSSPSSSV PSVSVGSPPA ADVISTSLQR  120
TVAVTPAPSS VGRHQAPPPV ARPPPPPHPR PPPLPFVRHG GPGHVCFPSA EADDAAMAQA  180
MLDVISASSS SALPTPPSTA PPPPPGNHHR ARRRWTAATA FRAYNAALAP RTPWRPPGAP  240
AGQRMIKMGI SILRRMHMLR FSRERTAGGT TTTTMVQRGQ EGDDDPSSPA VPSSSQLNHM  300
ISERRRRERL NESFEALRGL LPPGSKKDKA TVLAKTLDYM NILVAQIADL EARNRSLESR  360
AHHHHHRHAN GGSSSLEQRV VVLQQGLMSG TGTSSSERVQ VHVTTAGDDS GASTSSSPAA  420
GRREVVTVRV HARAAQGDVA ELVARALAVI KDMGCFTVVA VDAAGRPSDA GGGSHVAEAT  480
FTLRATGGCG QSCRGFRDTT VERFVDGRRR IDDRAWAPTS TDLGMNGWMR TSP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302307ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G094600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451784.20.0putative transcription factor bHLH041
TrEMBLA0A1Z5RLM30.0A0A1Z5RLM3_SORBI; Uncharacterized protein
STRINGSb04g007795.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-13bHLH family protein