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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G094600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 597aa MW: 63802.2 Da PI: 10.6315 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.4 | 1.9e-11 | 361 | 404 | 4 | 52 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +h + ErrRR+r+N++fe Lr llP+ K +Ka++L k+ +Y++ Sobic.004G094600.2.p 361 NHMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLAKTLDYMN 404 78999********************95.....599************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.567 | 357 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-16 | 358 | 432 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-15 | 360 | 426 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-9 | 361 | 404 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-12 | 363 | 412 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.79E-5 | 372 | 411 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 597 aa Download sequence Send to blast |
MPAGRRRVKI NVAAAGRPAR PPYVWLARRR TMGAGEVMQL EIFHSFRSSS IDLRACVRCV 60 PGWAYKDGRS YMELPAHDLT TSASLPMQQQ FYQEAGIKMA AFMGCESGEI EIGMSTAASS 120 GGSPMSLEST LHQVFSEDFF QQSLLEELLQ LPPTRPSSPS SSVPSVSVGS PPAADVISTS 180 LQRTVAVTPA PSSVGRHQAP PPVARPPPPP HPRPPPLPFV RHGGPGHVCF PSAEADDAAM 240 AQAMLDVISA SSSSALPTPP STAPPPPPGN HHRARRRWTA ATAFRAYNAA LAPRTPWRPP 300 GAPAGQRMIK MGISILRRMH MLRFSRERTA GGTTTTTMVQ RGQEGDDDPS SPAVPSSSQL 360 NHMISERRRR ERLNESFEAL RGLLPPGSKK DKATVLAKTL DYMNILVAQI ADLEARNRSL 420 ESRAHHHHHR HANGGSSSLE QRVVVLQQGL MSGTGTSSSE RVQVHVTTAG DDSGASTSSS 480 PAAGRREVVT VRVHARAAQG DVAELVARAL AVIKDMGCFT VVAVDAAGRP SDAGGGSHVA 540 EATFTLRATG GCGQSCRGFR DTTVERFVDG RRRIDDRAWA PTSTDLGMNG WMRTSP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 365 | 370 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G094600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002451784.2 | 0.0 | putative transcription factor bHLH041 | ||||
TrEMBL | A0A1Z5RLM6 | 0.0 | A0A1Z5RLM6_SORBI; Uncharacterized protein | ||||
STRING | Sb04g007795.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 2e-13 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G094600.2.p |