PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G094600.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 619aa    MW: 65260.4 Da    PI: 8.1524
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G094600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11402445452
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                           +h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ +Y++
  Sobic.004G094600.1.p 402 NHMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLAKTLDYMN 445
                           78999********************95.....599************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.567398447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16399473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-15401467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9402445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-12404453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-5413452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MDTLFVLGHE SRLRILQQAA SRVPGCAYLC AWAAVPAQPL HQASSSSSST SAAAATSARL  60
LLCCLDAWLC DGGDRRPSLG DDDARRLRAL FDAYRGSLCT PIAGCVPGWA YKDGRSYMEL  120
PAHDLTTSAS LPMQQQFYQM AAFMGCESGE IEIGMSTAAS SGGSPMSLES TLHQVFSEDF  180
FQQSLLEELL QLPPTRPSSP SSSVPSVSVG SPPAADVIST SLQRTVAVTP APSSVGRHQA  240
PPPVARPPPP PHPRPPPLPF VRHGGPGHVC FPSAEADDAA MAQAMLDVIS ASSSSALPTP  300
PSTAPPPPPG NHHRARRRWT AATAFRAYNA ALAPRTPWRP PGAPAGQRMI KMGISILRRM  360
HMLRFSRERT AGGTTTTTMV QRGQEGDDDP SSPAVPSSSQ LNHMISERRR RERLNESFEA  420
LRGLLPPGSK KDKATVLAKT LDYMNILVAQ IADLEARNRS LESRAHHHHH RHANGGSSSL  480
EQRVVVLQQG LMSGTGTSSS ERVQVHVTTA GDDSGASTSS SPAAGRREVV TVRVHARAAQ  540
GDVAELVARA LAVIKDMGCF TVVAVDAAGR PSDAGGGSHV AEATFTLRAT AGEFDAASLR  600
EAVVKAAEDS ATPPSNDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406411ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G094600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451784.20.0putative transcription factor bHLH041
TrEMBLA0A194YNQ30.0A0A194YNQ3_SORBI; Uncharacterized protein
STRINGSb04g007795.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Representative plantOGRP1445644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-16bHLH family protein