|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sobic.004G031100.1.p |
Common Name | Sb04g002700, SORBIDRAFT_04g002700 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
Family |
bZIP |
Protein Properties |
Length: 172aa MW: 17731 Da PI: 7.444 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.004G031100.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 36.6 | 9.6e-12 | 36 | 80 | 4 | 48 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48
+r++r+ +NRe+ArrsR RK+ ++eL+ ++ L eN +
Sobic.004G031100.1.p 36 QRRAKRMLSNRESARRSRMRKQRHLDELTAQAAHLRRENAHVATA 80
689************************************876655 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009845 | Biological Process | seed germination |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 172 aa
Download sequence Send
to blast |
MASSSGSGSS GSLSAATAAL AAAAGTEEEL RALMEQRRAK RMLSNRESAR RSRMRKQRHL 60 DELTAQAAHL RRENAHVATA LGLTTQGLLA VDAENAVLRT QAAELAARLG SLNDILACMN 120 TNAAAAVGAV AVSVSLTAAA ASSSDPYLAF DGATALDDLL RSCPENMYQL C*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT067356 | 0.0 | BT067356.2 Zea mays full-length cDNA clone ZM_BFc0022C11 mRNA, complete cds. |
GenBank | BT085301 | 0.0 | BT085301.2 Zea mays full-length cDNA clone ZM_BFb0368K21 mRNA, complete cds. |
GenBank | BT085353 | 0.0 | BT085353.2 Zea mays full-length cDNA clone ZM_BFc0002B07 mRNA, complete cds. |
GenBank | HQ858796 | 0.0 | HQ858796.1 Zea mays clone UT1860 bZIP transcription factor mRNA, partial cds. |