PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.003G253200.1.p | ||||||||
Common Name | Dof13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 169aa MW: 17251.5 Da PI: 10.7167 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 78.8 | 6.5e-25 | 87 | 135 | 11 | 58 |
zf-Dof 11 CdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg.grrkn 58 C ++tkfCy+nny++ qPr++C+aCrryWt+GGalr v + grr+ Sobic.003G253200.1.p 87 CPRRETKFCYFNNYNVRQPRHLCRACRRYWTAGGALRRVASASpGRRRP 135 66689*********************************98765255554 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-16 | 83 | 122 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 20.998 | 85 | 136 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.0E-21 | 86 | 134 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 169 aa Download sequence Send to blast |
MASHLPDADA AGFKLFGKVI QPPDAHHRAA DEGGAPPQLP PPTTALPPPP PPPPSPPLPP 60 QPPLPLQQQA TGATGGTSGG GGEPLPCPRR ETKFCYFNNY NVRQPRHLCR ACRRYWTAGG 120 ALRRVASASP GRRRPRPTTA RSVAAAAAAA AAASSAAAAA AEEVGGER* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.003G253200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021312639.1 | 3e-54 | dof zinc finger protein DOF2.4 | ||||
TrEMBL | A0A1W0VYW0 | 1e-112 | A0A1W0VYW0_SORBI; Uncharacterized protein | ||||
STRING | Sb03g030850.1 | 2e-55 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14716 | 16 | 20 |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G29160.1 | 8e-18 | Dof family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.003G253200.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|