PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G194400.1.p
Common NameSb03g025770, SORBIDRAFT_03g025770
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 395aa    MW: 42737.1 Da    PI: 7.0916
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G194400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1041.3e-32791732103
                           HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
          HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                           F++k+ye++ d++++ ++sw     gnsfvv+d++ +a  +Lp++Fkh nfaSF+RQLn+YgF+kv+ ++         weF+++sF +
  Sobic.003G194400.1.p  79 FVSKTYEMVADAATDAVVSWApgGAGNSFVVWDPRALAAGILPRFFKHANFASFIRQLNIYGFRKVNPDR---------WEFANESFLA 158
                           9********************55556*****************************************999.........********** PP

                           XXXXXXXXXXXXXXX CS
          HSF_DNA-bind  89 gkkellekikrkkse 103
                           g+k+ll++ikr++ +
  Sobic.003G194400.1.p 159 GQKHLLKNIKRRRAS 173
                           ***********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-5175170IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.58E-3076170IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-3377170IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.5E-2879170IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-1779102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-17119131IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340120144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-17132144IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGSSSCPLSG SPGPSGSNSK PRTTARASGV GFGGVAMARS VAVAAVKLEP KPEPWAAGAE  60
EASSVVPRSM EGPPLPAPFV SKTYEMVADA ATDAVVSWAP GGAGNSFVVW DPRALAAGIL  120
PRFFKHANFA SFIRQLNIYG FRKVNPDRWE FANESFLAGQ KHLLKNIKRR RASKPQMEAK  180
PRNCAGACLG SPKDPSEVES LKRDRAALRA EVITLRQQYN ICKSQLVALE ERILNNERNQ  240
QRAIAFFAKV LSNPGFVQQV LLNYAKEKEL RGASKRQRLM ENEEHRHGDL PLRSGTEAAF  300
ATVAAGVGVS AGSSHGGTAA KQEPGPELNG QEMDSIWYDV WDELDAIPGA EMDRREADKG  360
VAGFDVEDFS GRPCGWDDDC SYLAEPMQFV EHYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-257017311123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163169LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G194400.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0695720.0BT069572.1 Zea mays full-length cDNA clone ZM_BFb0177O03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455822.10.0heat stress transcription factor A-6a
SwissprotQ657C01e-154HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLC5XNS00.0C5XNS0_SORBI; Uncharacterized protein
STRINGSb03g025770.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Representative plantOGRP1432844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-71heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]