PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G058200.2.p
Common NameSb03g004980, SORBIDRAFT_03g004980
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 237aa    MW: 26101 Da    PI: 5.2413
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G058200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-1955105155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           + y+GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa a+++a+k+++g
  Sobic.003G058200.2.p  55 CVYRGVRQRT-WGKWVAEIREP---N-RgRRLWLGSFPTAVEAAHAYDEAAKAMYG 105
                           68*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-1455105IPR001471AP2/ERF domain
SMARTSM003806.1E-3456119IPR001471AP2/ERF domain
PROSITE profilePS5103221.73356113IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-2156114IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-3156114IPR001471AP2/ERF domain
CDDcd000182.62E-2957115No hitNo description
PRINTSPR003673.5E-95768IPR001471AP2/ERF domain
PRINTSPR003673.5E-97995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MRRKSTGPDS IAETIKWWKE QNQKLQDESG SRKAPAKGSK KGCMTGKGGP ENVNCVYRGV  60
RQRTWGKWVA EIREPNRGRR LWLGSFPTAV EAAHAYDEAA KAMYGPKARV NFSDNSADAN  120
SGCTSALSLL ASSVPVATLQ RSDEKVETEV ESVETEVHEV KTEGNDDLGS VHVACKTVDV  180
IQSEKSVLHK AGEVSYDYFN VEEVVEMIII ELNADKKIEA HEEYHDGDDG FSLFAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1557112359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.138270.0callus
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G058200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2510160.0EU251016.1 Sorghum bicolor desiccation responisve element-binding protein (Dreb2) mRNA, complete cds.
GenBankEU5006470.0EU500647.1 Sorghum bicolor cultivar M35-1 DRE-binding protein 2 (DREB2) gene, complete cds.
GenBankEU5006490.0EU500649.1 Sorghum bicolor cultivar Bidar Land Race DRE-binding protein 2 (DREB2) gene, complete cds.
GenBankEU5006510.0EU500651.1 Sorghum bicolor cultivar Y-4 DRE-binding protein 2 (DREB2) gene, complete cds.
GenBankEU5006530.0EU500653.1 Sorghum bicolor cultivar Basavanapada DRE-binding protein 2 (DREB2) gene, complete cds.
GenBankEU5006540.0EU500654.1 Sorghum bicolor cultivar DSV-4 DRE-binding protein 2 (DREB2) gene, complete cds.
GenBankEU5006580.0EU500658.1 Sorghum bicolor cultivar SPV570 DRE-binding protein 2 (DREB2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457289.11e-176dehydration-responsive element-binding protein 2A isoform X1
RefseqXP_021311681.11e-176dehydration-responsive element-binding protein 2A isoform X2
SwissprotA2WL191e-121DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLA0A1W0VVY11e-175A0A1W0VVY1_SORBI; Uncharacterized protein
TrEMBLC5XNL01e-175C5XNL0_SORBI; Uncharacterized protein
STRINGSb03g004980.11e-176(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-33ERF family protein