![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.003G031100.2.p | ||||||||
Common Name | Sb03g002910, SORBIDRAFT_03g002910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 425aa MW: 45427.9 Da PI: 7.66 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.1 | 5.6e-12 | 256 | 298 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++f+ Lr +lP+ a K +K +iL +A eY++sL+ Sobic.003G031100.2.p 256 SERKRREKLNDSFHALRAVLPPgA------KKDKTSILIRAREYVRSLE 298 6********************966......99999***********996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.018 | 248 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-15 | 249 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.44E-12 | 250 | 302 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-12 | 252 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-11 | 254 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-9 | 256 | 298 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 9.45E-4 | 289 | 317 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-4 | 297 | 315 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 425 aa Download sequence Send to blast |
MDMDSWLHGY ATTNAAGNNG FMCGYAASSC TPAELQFMEG EQQQFLISSQ IQHHLNQISM 60 RMNMDDEAAV YVSSNDGDMH DRYPIVEGLL DDPHHAGTCS FPSFSSSSIS LPASASLSCS 120 PASSSAHILA APAAAAGGCN QQYPEVSSHV PLLPPPPPAP HAVPASYDHQ YTNRHAPESP 180 AKTTTGAFKH YARHLGPKRP PKPGACGQRM FKTAMSVLSK MHVAARYSQQ QYYYQAAAAA 240 EAAQPPSVNQ LQHMFSERKR REKLNDSFHA LRAVLPPGAK KDKTSILIRA REYVRSLEAK 300 VAELEEKNMS LESRLTRHDG GRSKNGGSGG DDHDSGETTK VQVEITRAAN EETTFTLTIA 360 VRSSSPCNMT DVVVRTLQCL KEQIGDGVSL VAMSTSTSGG GGAGPAATGV KNASPRAVLT 420 MQIK* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 256 | 261 | ERKRRE |
2 | 257 | 262 | RKRREK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.003G031100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457184.2 | 0.0 | putative transcription factor bHLH041 | ||||
TrEMBL | A0A1B6Q116 | 0.0 | A0A1B6Q116_SORBI; Uncharacterized protein | ||||
STRING | Sb03g002910.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56960.1 | 3e-23 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.003G031100.2.p |
Entrez Gene | 8084341 |