PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G031100.1.p
Common NameSb03g002910, SORBIDRAFT_03g002910
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 472aa    MW: 50165.1 Da    PI: 7.0069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G031100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-12256298855
                           HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            Er+RR+++N++f+ Lr +lP+ a      K +K +iL +A eY++sL+
  Sobic.003G031100.1.p 256 SERKRREKLNDSFHALRAVLPPgA------KKDKTSILIRAREYVRSLE 298
                           6********************966......99999***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.018248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-15249314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-12250302No hitNo description
Gene3DG3DSA:4.10.280.102.2E-12252296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9256298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146868.13E-4289317No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-4297315No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDMDSWLHGY ATTNAAGNNG FMCGYAASSC TPAELQFMEG EQQQFLISSQ IQHHLNQISM  60
RMNMDDEAAV YVSSNDGDMH DRYPIVEGLL DDPHHAGTCS FPSFSSSSIS LPASASLSCS  120
PASSSAHILA APAAAAGGCN QQYPEVSSHV PLLPPPPPAP HAVPASYDHQ YTNRHAPESP  180
AKTTTGAFKH YARHLGPKRP PKPGACGQRM FKTAMSVLSK MHVAARYSQQ QYYYQAAAAA  240
EAAQPPSVNQ LQHMFSERKR REKLNDSFHA LRAVLPPGAK KDKTSILIRA REYVRSLEAK  300
VAELEEKNMS LESRLTRHDG GRSKNGGSGG DDHDSGETTK VQVEITRAAN EETTFTLTIA  360
VRSSSPCNMT DVVVRTLQCL KEQIGDGVSL VAMSTSTSGG GGAGPAATGV KNASPRAVLT  420
MQIKSPGIDW EEQPVKDAVA KVVADALTTT TTSAAATTGS SCFVEASQLI S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256261ERKRRE
2257262RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G031100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457184.20.0putative transcription factor bHLH041
TrEMBLA0A1B6Q1160.0A0A1B6Q116_SORBI; Uncharacterized protein
STRINGSb03g002910.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Representative plantOGRP10417410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-23bHLH family protein