PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G375400.6.p | ||||||||
Common Name | Sb02g039300, SORBIDRAFT_02g039300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 321aa MW: 35903.5 Da PI: 4.7584 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4.1e-18 | 99 | 149 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r+++ +g+W+AeIrdp++ r++lg++ taeeAa+a++ a+ +++g Sobic.002G375400.6.p 99 TQYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYSTAEEAARAYDTAAWRIRG 149 58********.**********954...4*********************988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.82E-32 | 99 | 157 | No hit | No description |
Pfam | PF00847 | 1.6E-11 | 100 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-35 | 100 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-22 | 100 | 158 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-31 | 100 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.251 | 100 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 101 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 123 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MCGGAILSDL YSPVRQKVTA NHLWTESGSS KSGKNWKRKS SWEFGEDDFE ADFEGFEDGD 60 SEEDVDFVHE GQEFQTNSSN LVVGSNVHTA KVASRKRRTQ YRGIRRRPWG KWAAEIRDPR 120 KGVRVWLGTY STAEEAARAY DTAAWRIRGK KAKVNFPSAI TNPEKRRRGR VARPRKKIAS 180 QETLKLNDAS DDHVISAGSS TDDATAVKLE LPESASPPPM SSAWLDAFEL NQVNELSYLE 240 VEETVGETRV TDTVFGNGEV RPADDFVYYD PFPDFVQLPY LEGNSYENID VLFNGDTVQE 300 GVNIGGLWSF DDVPMDHGVY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-21 | 100 | 157 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 98 | SRKRRT |
2 | 165 | 176 | RRRGRVARPRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.9165 | 0.0 | callus| shoot |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G375400.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002463183.1 | 0.0 | ethylene-responsive transcription factor ERF073 | ||||
Refseq | XP_021308253.1 | 0.0 | ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | C5XE21 | 0.0 | C5XE21_SORBI; Uncharacterized protein | ||||
STRING | Sb02g039300.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-27 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G375400.6.p |
Entrez Gene | 8079193 |