PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G375400.4.p
Common NameSb02g039300, SORBIDRAFT_02g039300
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 321aa    MW: 35903.5 Da    PI: 4.7584
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G375400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-1899149155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++y+G+r+++ +g+W+AeIrdp++     r++lg++ taeeAa+a++ a+ +++g
  Sobic.002G375400.4.p  99 TQYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYSTAEEAARAYDTAAWRIRG 149
                           58********.**********954...4*********************988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.82E-3299157No hitNo description
PfamPF008471.6E-11100149IPR001471AP2/ERF domain
SMARTSM003801.7E-35100164IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-22100158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-31100158IPR001471AP2/ERF domain
PROSITE profilePS5103225.251100157IPR001471AP2/ERF domain
PRINTSPR003672.8E-11101112IPR001471AP2/ERF domain
PRINTSPR003672.8E-11123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MCGGAILSDL YSPVRQKVTA NHLWTESGSS KSGKNWKRKS SWEFGEDDFE ADFEGFEDGD  60
SEEDVDFVHE GQEFQTNSSN LVVGSNVHTA KVASRKRRTQ YRGIRRRPWG KWAAEIRDPR  120
KGVRVWLGTY STAEEAARAY DTAAWRIRGK KAKVNFPSAI TNPEKRRRGR VARPRKKIAS  180
QETLKLNDAS DDHVISAGSS TDDATAVKLE LPESASPPPM SSAWLDAFEL NQVNELSYLE  240
VEETVGETRV TDTVFGNGEV RPADDFVYYD PFPDFVQLPY LEGNSYENID VLFNGDTVQE  300
GVNIGGLWSF DDVPMDHGVY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-211001571472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19398SRKRRT
2165176RRRGRVARPRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.91650.0callus| shoot
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G375400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463183.10.0ethylene-responsive transcription factor ERF073
RefseqXP_021308253.10.0ethylene-responsive transcription factor ERF073
TrEMBLC5XE210.0C5XE21_SORBI; Uncharacterized protein
STRINGSb02g039300.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-27ethylene-responsive element binding protein