PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G212000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 391aa MW: 41914.5 Da PI: 4.6364 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.8e-19 | 134 | 183 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdps+ r++lg++ taeeAa+a++a ++k++g Sobic.002G212000.2.p 134 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 183 69*******.**********965...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.75E-32 | 134 | 192 | No hit | No description |
SMART | SM00380 | 2.0E-37 | 134 | 197 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-32 | 134 | 192 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-22 | 134 | 193 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.933 | 134 | 191 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 135 | 146 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-12 | 135 | 183 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 157 | 173 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MCGGAILSGF IPPSGVAAAA AAAKKKQQQG RRVTADLLWP GPGKKGALPQ EEEDDFEADF 60 REFERGLSED DDVDGAGEGG DDEVQELAPP EPVRFAFAAA AKAPRPAVDG VMTPKDVQGD 120 RPTANSVKRN RKNQYRGIRQ RPWGKWAAEI RDPSKGVRVW LGTYNTAEEA ARAYDAEARK 180 IRGKKAKVNF PDEVPGAQKS TAKPTDSNAT KLAPPPKACA DEVFSNLNND NNDLFAMFAF 240 NDNKVPVKPA EVASFLPAVK PLVPSKRSAT NMLSDQNSNS YGSSDFGWDD DTMTSGYTFA 300 PNNAIPASYM QGGESKRMRN NYGVAMFQGN GAPSLAQVMP GFDPEMNYQP LPYVESSSSD 360 ASMDSLLPQD GASNGDIWSL DELLMAAGAY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-20 | 133 | 194 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-20 | 134 | 194 | 5 | 66 | ATERF1 |
3gcc_A | 4e-20 | 134 | 194 | 5 | 66 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.4018 | 0.0 | callus| embryo| leaf| ovary| panicle| root| shoot |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G212000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF424221 | 0.0 | EF424221.1 Saccharum arundinaceum EREB mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021309361.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A1B6QCP0 | 0.0 | A0A1B6QCP0_SORBI; Uncharacterized protein | ||||
STRING | Sb02g025530.2 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 1e-25 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G212000.2.p |