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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G080600.1.p | ||||||||
Common Name | Sb02g006710, SORBIDRAFT_02g006710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 247aa MW: 27115.4 Da PI: 6.5152 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.6 | 8.9e-20 | 9 | 55 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k ien+ r+v fskRr+g++KKA+ELS+LC+a v ++fs++g+ + Sobic.002G080600.1.p 9 KHIENEDARKVCFSKRRQGLFKKASELSILCGATVGSVVFSNSGRSF 55 68*****************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.2E-29 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.26E-25 | 1 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.165 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.63E-31 | 3 | 71 | No hit | No description |
PRINTS | PR00404 | 2.7E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-23 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MPRRKTEIKH IENEDARKVC FSKRRQGLFK KASELSILCG ATVGSVVFSN SGRSFSFGHP 60 SINDVADRFL NSVAPVDFAS GGASHDNSGA VMDTVHRLNM ELSELQQALD SENKKKERLK 120 EAIEKEKGQP MMQWLNANVL ELGLAELQEF QKCLEAVDIA VKEKTNQILA EARQTTQGSV 180 PQLPMEIPST SRYQFGQHIS ANSMAFTDPR SSNGFTDGFE VNDPLRSGGL QDVCGLGNFL 240 NNQNHG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G080600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459568.2 | 0.0 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A1B6Q9V7 | 0.0 | A0A1B6Q9V7_SORBI; Uncharacterized protein | ||||
STRING | Sb02g006710.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-28 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G080600.1.p |
Entrez Gene | 8069120 |