PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G363500.3.p
Common NameSb01g034706, SORBIDRAFT_01g034706
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 1146aa    MW: 127186 Da    PI: 9.4123
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G363500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-074686345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                           W+++E e+++ a +++G++ W+++a  +   Rt  ++k  ++
  Sobic.001G363500.3.p 46 QWSKDELERFYGAYRKYGKD-WRKVAGAIR-DRTSDMVKALYN 86
                          6*****************99.*********.***999997666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.07E-104192IPR009057Homeodomain-like
SMARTSM007170.00394391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-54686IPR009057Homeodomain-like
PfamPF002494.8E-64687IPR001005SANT/Myb domain
CDDcd001679.67E-54789No hitNo description
SMARTSM011358.1E-58628729IPR033471DIRP domain
PfamPF065845.6E-33628728IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1146 aa     Download sequence    Send to blast
MASARKVRNT NKRYAKINED WQDKDTTSVP KSKVRKKKLS DMLGSQWSKD ELERFYGAYR  60
KYGKDWRKVA GAIRDRTSDM VKALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS  120
DRESNDSPKV SRRLQKRGRA KLQSVSKTSD THYTDLLQPQ PASSSYGCLS LLKKKRSGDL  180
FVGNRPRAVG KRTPRVPVAS MYHRDDRGAS NRQAKPDANN GDDEGAHVAA LALAEVYQRG  240
GSPQVSHTPR RSGDHMFLSP AKSSDKKNAD SEMGSSKLHG FQLDADYPEG SLGSREAETG  300
DYTKGASYLI ANKGSPSSKP QKKVKRPQKR RKKVVRKTGD QFEDDREACS GTEEGRSMKK  360
AKEEPELETL GSKTAWPSST SNKRSRQLFF DDERSALDAL HTLADLSVNI LQPSPVVESE  420
SSAQIKDENK DNDSDGKPGI PAAAVSVYEQ KDNSKSTSKK LKRQSEMAST DMVTRKKVKL  480
AKDTNHDGST TSEVKQQACT CGVKTEKKKK SSMGKILKEE KNMPKDVEKT EVSPEEEKAS  540
SNKTMDIAET TTQVATTPQA DLIAKGKSRR KLGIQKSLTQ ECKPAEGAGD SGSDKLSYSL  600
SNIIDLKDKL SHCLSSRLLR RWCMFEWFYS AIDYPWFAKS EFIEYLNHVK LGHVPRLTRV  660
EWGVIRSSLG KPRRLSKQFL HEEREKLAQY RDSVRQHYTE LRSGVREGLP TDLARPLAVG  720
QRVIACHPRT RELHDGNVLT VDHNQCRVQF DRPELGVELV KDIDCMPLHP LENFPESLRQ  780
QSIFNGYYSH LSEAKYEDQM KELASGGASR STLNLNGADA AFPSGHPMST LMKQAKAKAT  840
VNEVAVTTQQ SMYSQPCTLS QIQEREADIR ALGELSRALD KKEALLVELR HMNEEVSGNQ  900
RDGEIIRDLE HFRKQYAMVL VQLRDSNDQV AAALLSLRQR NTYHGNPGSK SMENGIAFAG  960
ASDPYNLFSY INPESDSQVI EVIETSKCRA RMMVDVAIQA MCKVSEGENA FAKIGEALDH  1020
LNSRGTGSGS SILGIRRIPP DSGQSNASYH DNCTTAPAAN SSSKVPNGCD SETQFPKELI  1080
SSCVATMLMI KNCTEKQYHP AEVAHILDSA LSSVQPCSSQ NVPIFRDIEM CMGIIKNQML  1140
ARVSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320336QKKVKRPQKRRKKVVRK
2323329VKRPQKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.119630.0embryo| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G363500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0389050.0BT038905.1 Zea mays full-length cDNA clone ZM_BFb0339F13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307512.10.0protein ALWAYS EARLY 2
TrEMBLA0A1B6QN220.0A0A1B6QN22_SORBI; Uncharacterized protein
STRINGSb01g034706.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62302331
Representative plantOGRP24791321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding