PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G143400.1.p
Common NameSb01g012490, SORBIDRAFT_01g012490
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 361aa    MW: 39485.9 Da    PI: 6.4365
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G143400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.31.1e-1943111270
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                           Wt  e+++Liea+r+++e+   g +  ++W++v +++++ g++rs++qC+++w+nl ++ykk+++ e +
  Sobic.001G143400.1.p  43 WTLPETMLLIEAKRKVHEERHPGDQGLARWRWVEDYCWRAGCRRSQNQCNDRWDNLMRDYKKVRAYELS 111
                           ***************************************************************987755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.9443599IPR017877Myb-like domain
SuperFamilySSF466891.79E-638100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-538101IPR009057Homeodomain-like
PfamPF138378.2E-1441109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDDTIGGNRG LLGQARDDEQ ARNVVVVGAG ALTVARDYQR GNWTLPETML LIEAKRKVHE  60
ERHPGDQGLA RWRWVEDYCW RAGCRRSQNQ CNDRWDNLMR DYKKVRAYEL SGAGAGAGGR  120
APSYWVMGRV ERKERGLPSN LLREIYDAMG EVIERRMSMG CAGSSGGPGA AFTAAASSSS  180
LLDVPMQASP LAQVLPRPLL PLEQETHGHS SPESPEKKRR RPSLDELRPG SSTPLAPGTH  240
GHRQEQGRHR EEEDEEEDDE SSEAEYSDGD DDYNVLSGAI GRCAAILSEA LESREAAEER  300
RHREVMAVEE RRGRARQARR EAGEQCVAGL AAAVNQLAGS MLALAAAKHK DKGGGPAARK  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G143400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0836020.0BT083602.1 Zea mays full-length cDNA clone ZM_BFb0018E14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466697.10.0trihelix transcription factor ASR3
TrEMBLC5WQB70.0C5WQB7_SORBI; Uncharacterized protein
STRINGSb01g012490.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Representative plantOGRP18811637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.18e-40Trihelix family protein