PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G093200.1.p
Common NameSb01g008380, SORBIDRAFT_01g008380
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 372aa    MW: 40678.3 Da    PI: 4.6839
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G093200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.7e-35591492101
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d+++++++sw   gnsfvv+d + fa+ +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F++g+
  Sobic.001G093200.1.p  59 FLTKTYDVVDDPNTDTVVSWGFAGNSFVVWDANAFATVILPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFQRGQ 138
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkk 101
                           kell++ikr++
  Sobic.001G093200.1.p 139 KELLRTIKRRR 149
                           *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.86E-3455148IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5855148IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.1E-3855148IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.3E-195982IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3159148IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-1997109IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434098122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-19110122IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDPFHGGIVK EEEFDFDFDF TGVSAGDAAV AAAASSWAVA LPELPRPMEG LGEVGPTPFL  60
TKTYDVVDDP NTDTVVSWGF AGNSFVVWDA NAFATVILPR YFKHSNFSSF VRQLNTYGFR  120
KVDPDRWEFA NEGFQRGQKE LLRTIKRRRP PSSPSAQQGQ APSSCLEMGR FGLDGEVHRL  180
QRDKRILLAE VVKLRQEQQA TRAQMQAMEE RITTAEQKQL QMTVFLARAL KNPSFIRMLV  240
DRQGLGGRRR ELEDALSKKR RRPIEYHLPP DGESSGTATE AAVNDYICGL PVGVNGVAEA  300
DDDGSRLEGS GGGGDTESFW VELLSLGLEE KHLEGGGGSE EGSGADVDDD VDVLVQSIYH  360
LNPNPGSPSG K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-265014817129Heat shock factor protein 1
5d5v_B5e-265014817129Heat shock factor protein 1
5d5v_D5e-265014817129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247261RRRELEDALSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G093200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0858160.0BT085816.2 Zea mays full-length cDNA clone ZM_BFc0067H20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463891.10.0heat stress transcription factor A-2a
SwissprotQ84MN71e-147HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLC5X1770.0C5X177_SORBI; Uncharacterized protein
STRINGSb01g008380.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-75heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]