PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G044300.8.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 304aa    MW: 32126.6 Da    PI: 8.4725
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G044300.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_177.31.9e-24195257163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv  L+a N +L++el+elkk ++ +++e+
  Sobic.001G044300.8.p 195 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVTDLTAINGTLRSELDELKKACEDMEAEN 257
                           89*********************************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.3E-16190255No hitNo description
SMARTSM003381.0E-20195259IPR004827Basic-leucine zipper domain
PfamPF001701.4E-21195257IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.576197260IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.44E-10198252No hitNo description
CDDcd147026.59E-20200250No hitNo description
PROSITE patternPS000360202217IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAAAAAAAGA PYGTPVPFHP AYYATHASMA TVNAGHPPSI VSFSSVPYPS AEPVAVAEGK  60
GKRKSPGAPS VGCTSGSAGG SENSSDKRDA SAHHKVLPSV KRRKSSGANV QGEPSQAATG  120
QDAAAESRIT AKKRSAAKLS ISTPEMAATS NVRPNLNIGM ELWSDSPVKA ETSGQGEIYA  180
AAPSQLDSAL SMMDERELKR ERRKQSNRES ARRSRLRKQQ ECEELAQKVT DLTAINGTLR  240
SELDELKKAC EDMEAENSQL MGELEQFEAP SVVTTLSIQI DTSKAHHRSS DQHGNRNNTD  300
SKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211217RRSRLRK
2211218RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G044300.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6852070.0AY685207.1 Zea mays ABRE-binding factor Embp-2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317831.10.0DNA-binding protein EMBP-1 isoform X1
SwissprotP250328e-61EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A1Z5S4A40.0A0A1Z5S4A4_SORBI; Uncharacterized protein
STRINGSb01g004080.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-28G-box binding factor 1