PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G016600.4.p
Common NameSb01g001615, SORBIDRAFT_01g001615
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 836aa    MW: 93827 Da    PI: 5.6961
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G016600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.93.3e-1895179191
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           +fY++YA ++GF v+++ks+ + + g + +  +vC+++g+ +e+        + r++ +t+C+a+++ +++ d+  ++t+++leHnH+l
  Sobic.001G016600.4.p  95 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLVLVCNRWGTGKEDACY-----QARPTAKTNCQATVVARLWVDNLLHLTDVNLEHNHAL 177
                           6*****************9998.6777****************9999.....999*********************************9 PP

                  FAR1  90 ap 91 
                           +p
  Sobic.001G016600.4.p 178 NP 179
                           75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-1695179IPR004330FAR1 DNA binding domain
PfamPF105519.4E-28282373IPR018289MULE transposase domain
PROSITE profilePS509669.198563599IPR007527Zinc finger, SWIM-type
SMARTSM005750.006574601IPR006564Zinc finger, PMZ-type
PfamPF044340.0011576595IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MMEVGLNPGE ELDFGGNQDD DDDAGDISPG SKELAAMVEA AAAAETVELD GGVGVEAAAT  60
AAAASSSSSL AALQYGDDRT PRDGMVFKSY EEVLNFYKRY ALRTGFGVCV KKSSFTKAGL  120
CRRLVLVCNR WGTGKEDACY QARPTAKTNC QATVVARLWV DNLLHLTDVN LEHNHALNPS  180
AARFLRCYKT LPSGLSKDLV VRAARGECSA AGDIDVPIFD EWGRLKIGEA DVVAINGFFA  240
QMQAKLPNSF YVMDFYVEGH LRSVLWADSR SRAAYQYFSD AVWIDTTCLR NKYHVPLVSF  300
LGVNHHGQLV LLGCGLLSDE STESFFWLFK SWLTCMKGRP PNAIVTDECV AIKAAVQEVF  360
PKIRHRISDW HVIRSISEKI GDLPEYEAMR TDLVSVIYDS LINNEFEAGW KNWVDRFGLQ  420
DNAWIVYLYE NRHLWAPAFL KDTFWAGLCT VSQRESPSTF FEDAVSSETT LVSFLASYMT  480
LLDNRYKMEQ QADFDSLNSS RVLISKYQME EQLSRLYTLN MFLKFQDELK ATMHCQVQLD  540
GSASSFMVID LTEAGNEMLN KKYEVVHCME TNRMECNCGL FQFGGIVCRH ALCVLKCQQL  600
YDIPPSYVID RWRADFKQLH YPDNPSKDLA TSNHVERYDY ISLQFLRLVE IGMASDEKYR  660
HAVRLLKDMK ETLLDDNLCR DLEQKLTPAE RAIVNGDNHT QPGSSEGGPT KKRRGRPPKK  720
NKEINVDSMD SLLVSSDVTQ KGVFHSASTT SNLGTHIRTP GMVDLMEEVH PSELSFDSRY  780
GVQSGPTHHF GNQLNAGNTL QFGQSTSAAE HSRVQWVFPN GMYQDDQVTY GRRTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G016600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466115.20.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_021302311.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A1B6QGW00.0A0A1B6QGW0_SORBI; Uncharacterized protein
STRINGSb01g001615.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.11e-123FAR1-related sequence 8