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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_25982.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | CO-like | ||||||||
Protein Properties | Length: 386aa MW: 42475.7 Da PI: 6.5547 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22 | 3.3e-07 | 26 | 62 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkgHtvv 40 + C+ ++ + fC+++++++C +C ++ H +H++v Sme2.5_25982.1_g00001.1 26 KSCEYCHVAAALVFCRTDNMFVCLSCDTSLHARHERV 62 57*****999************************976 PP | |||||||
2 | zf-B_box | 25 | 4e-08 | 62 | 107 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC C +H+ H++vp+ Sme2.5_25982.1_g00001.1 62 VWVCEVCEQAAASVTCRADAAALCVVCDRDIHSAnplaerHERVPV 107 689*******9*********************66999999999986 PP | |||||||
3 | CCT | 69.3 | 9.8e-24 | 309 | 352 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Sme2.5_25982.1_g00001.1 309 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 352 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.6E-7 | 23 | 64 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.655 | 23 | 64 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.3E-5 | 26 | 62 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.10E-8 | 28 | 64 | No hit | No description |
Gene3D | G3DSA:4.10.45.10 | 3.4E-4 | 36 | 60 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.85 | 60 | 107 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.9E-6 | 61 | 107 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.10E-8 | 63 | 107 | No hit | No description |
SMART | SM00336 | 9.4E-9 | 65 | 107 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.638 | 309 | 351 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.7E-18 | 309 | 351 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MGIFREAPNC FPQGWCGSGA AARMVKSCEY CHVAAALVFC RTDNMFVCLS CDTSLHARHE 60 RVWVCEVCEQ AAASVTCRAD AAALCVVCDR DIHSANPLAE RHERVPVIPF YHPVESVVKS 120 TASTLLVSIN GLDDAFTATR TTTTTTGITP ACVGHHDQED YNTDPWIPPN TITSKLPLNT 180 EMKSLGFMFS DSENFLDFDY PVSVEAQAQA QYNSANDSVV PVQTTAIKPL PFHHHEKHFE 240 IDFTQSHIKS YNTPSLSVSS SSLDVGIVPD GSSISEISHP FMKSMNNSSS IDLSSSANHQ 300 GEKLLGLDRE ARVLRYREKK KNRKFEKTIR YASRKAYAET RPRIKGRFAK RTEAGAGAGE 360 FDDIDGIFSG ADLVTSDSRY GVVPSF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234448.1 | 0.0 | CONSTANS-like protein | ||||
TrEMBL | A0A3Q7I061 | 0.0 | A0A3Q7I061_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g006630.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 1e-94 | CONSTANS-like 5 |