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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_17732.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 362aa MW: 39297.3 Da PI: 9.2502 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.8 | 7e-31 | 142 | 200 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed+ ++++tYeg+Hnh+ Sme2.5_17732.1_g00001.1 142 SDGCQWRKYGQKVAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDGAILNTTYEGRHNHP 200 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.5E-33 | 126 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-27 | 134 | 202 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.539 | 136 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.0E-37 | 141 | 201 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-26 | 143 | 200 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MNAENQRLRG MLTQVSNNYT ALQMHLASLM QRQQQVSTTS NTHDHKIVEA KSDQEKIVPS 60 GDELSHNSHS LSEERTVSAS PRNNIEVTRH TIGREESPES ESWIAIKVPK LISSMPNGQT 120 TEATMRKARV SVRARSEAPL ISDGCQWRKY GQKVAKGNPC PRAYYRCTMA VGCPVRKQVQ 180 RCAEDGAILN TTYEGRHNHP LPSAAMAMAS TTSAAANMLL SGSMPSVDGA LMNPNFPART 240 MLPCSSSMAT ISASAPFPTI TLDLTQNQNA LPYNQTSAQS QVPFQSGPQH TNFITSMPPP 300 PIPHNQSKFS GLEVSQPQQL QHVKNHPLFT QTLTAAITAD PNFTAAVAAA ISSIITSPGK 360 |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-22 | 132 | 203 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 8e-22 | 132 | 203 | 8 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF280263 | 0.0 | KF280263.1 Solanum tuberosum WRKY transcription factor (WRKY6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064265.1 | 0.0 | WRKY transcription factor 6-like | ||||
Swissprot | Q9C519 | 1e-109 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A3Q7FI33 | 1e-176 | A0A3Q7FI33_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g032950.2.1 | 1e-177 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA945 | 24 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-101 | WRKY family protein |