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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sme2.5_11392.1_g00002.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
TCP |
| Protein Properties |
Length: 285aa MW: 30779.3 Da PI: 9.1648 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_11392.1_g00002.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 116.4 | 3.7e-36 | 42 | 135 | 7 | 89 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.... 88
+ +++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a++s+s+++ s s+
Sme2.5_11392.1_g00002.1 42 KRKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAASVSQQGISVSAglmd 127
689*************************************************************8886666666655222224444 PP
TCP 89 .......k 89
+
Sme2.5_11392.1_g00002.1 128 esganiaR 135
44444431 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0008361 | Biological Process | regulation of cell size |
| GO:1900056 | Biological Process | negative regulation of leaf senescence |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MDPKQPNNNN IKPAHDQIKD LQIVKDDEAN KQQQQKQVVA PKRKDRHTKV EGRGRRIRMP 60
ALCAARIFQL TRELGHKSDG ETIQWLLQQA EPSIIAATGT GTIPASALAA AASVSQQGIS 120
VSAGLMDESG ANIARSGSSK SINSRTNWPM ICGNFGRPHL STAGIWPSPA PVVTSFGFQS 180
SSAPSSASLG SESSNYYLQK IGFPGFDLPA ATNMNPMSFT SILGASNQQL PGLELGLSQE 240
SHLGVLNSQT LNQIYQQARM QHPQQQQQNQ HQHQSPEDDS QVSGH
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
| Publications
? help Back to Top |
- Zhu P, et al.
Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
[PMID:27708161] - Wu JF, et al.
LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
Nat Commun, 2016. 7: p. 13181
[PMID:27734958] - Guan P, et al.
Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
[PMID:28202720] - Guan P
Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
Front Plant Sci, 2017. 8: p. 1697
[PMID:29033968] - Zhang N, et al.
MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
Plant J., 2018. 93(1): p. 66-78
[PMID:29086441] - Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
Plant Physiol., 2018. 176(2): p. 1694-1708
[PMID:29133375] - Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
Microbes Environ., 2017. 32(4): p. 314-323
[PMID:29187692]
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