PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09914.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 196aa    MW: 21900.6 Da    PI: 4.8072
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09914.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.15.5e-191354142
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             +r en  nrqvtfskRr g +KKA EL++LC+a  a+ i+s+
  Sme2.5_09914.1_g00002.1 13 ERMENAANRQVTFSKRRGGFFKKATELCTLCGAHLAIAILSE 54
                             589***********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.053554IPR002100Transcription factor, MADS-box
SMARTSM004328.7E-23563IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-21676IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-12727IPR002100Transcription factor, MADS-box
PfamPF003192.2E-181458IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-122742IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MRRPNGRRRV AIERMENAAN RQVTFSKRRG GFFKKATELC TLCGAHLAIA ILSEGKAYSC  60
GHPDVESIVD KFLELNLDAE VPNPVVVPQQ NPNADTLNRQ INRLTRSIEK EKERGRALQA  120
LRTEPPIEEL SLSELKRLCE ALEFAEEEAE RVYSQQLECL IEFPYQTLGS ALAPLRDVES  180
TSSDSDDEGP SGSNAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229071.12e-71agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7EEM15e-70A0A3Q7EEM1_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000944074e-67(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-26AGAMOUS-like 61