PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09141.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 376aa    MW: 42434.7 Da    PI: 7.1709
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09141.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00091163185123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+++F++   L  H  +H
  Sme2.5_09141.1_g00001.1 163 YECKTCNRTFPSFQALGGHRASH 185
                              99**********99999998887 PP
2zf-C2H212.40.00048259281123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++Cg  F +   L  H+r+H
  Sme2.5_09141.1_g00001.1 259 HKCSYCGAEFISGQALGGHMRRH 281
                              79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.51E-8162185No hitNo description
PfamPF139125.4E-13162187IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.843163190IPR007087Zinc finger, C2H2
SMARTSM003550.052163185IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
SuperFamilySSF576675.51E-8254281No hitNo description
Gene3DG3DSA:3.30.160.606.2E-4257283IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.1E-11259283IPR007087Zinc finger, C2H2
SMARTSM003550.015259281IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429259286IPR007087Zinc finger, C2H2
PROSITE patternPS000280261281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEAPQEEVIG VSKGKRTKRV RPQSLIPFMT INNAHSSSTD DTNVDSTVHG EEVSIINNNN  60
NDNNNNNNNN STSPPPINSD ENIPDEDVPT EEEEETAKCL ILLSQGGHHH HHHHQHHYHQ  120
TPPKRFLDLF NDDMGLYQTK FNSKRYVETT DLGNGAKGGT YVYECKTCNR TFPSFQALGG  180
HRASHKRPKP LTIEPKKQPF FYFSDQDEPS PPPPAPTPTT PNYKYNNKLS PLLSPLSSKF  240
NNINMDSPNY NKSPSPRIHK CSYCGAEFIS GQALGGHMRR HRGSANNSNT ILCLSPLSID  300
QEFANNNLKK PRNGLSLDLN LPAPQEYQNQ SRNLQHPPKY PQEQAQKQQQ EQEQEREQQQ  360
TTLGLSTTPQ LIGCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075787.10.0zinc finger protein ZAT5-like
TrEMBLA0A3Q7GQL20.0A0A3Q7GQL2_SOLLC; Uncharacterized protein
STRINGSolyc05g055500.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.16e-39C2H2 family protein