PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_05202.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

CO-like

Protein Properties

Length: 372aa MW: 42073.3 Da PI: 4.6195

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05202.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.2	2e-09	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k++++fC ++ +lC++C ++ H+ H++v Sme2.5_05202.1_g00004.1 16 ARACDSCLSKRARWFCPADDAFLCQSCDVSVHSAnqlasrHERV 59 578*****************************667888888876 PP
2	CCT	29.5	2.6e-11	337	360	1	24
CCT 1 ReaallRYkeKrktRkFeKkirYe 24 Rea+++RY+eKr+tR+F+KkirYe Sme2.5_05202.1_g00004.1 337 REARVSRYREKRRTRLFSKKIRYE 360 9**********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	7.8E-12	14	61	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.964	14	61	IPR000315	B-box-type zinc finger
Pfam	PF00643	9.3E-8	16	59	IPR000315	B-box-type zinc finger
CDD	cd00021	4.65E-11	17	61	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MSSESKMANA IGGKTARACD SCLSKRARWF CPADDAFLCQ SCDVSVHSAN QLASRHERVR 60 LETSSNKSTK FVDKTHQPAW HQGFTRKART PRNGKKAQIG QRKKGEENRV PEIGCEENSP 120 DENEFENEEQ LLYQVPVFDS FEAELCNVPD ETGNDITDLD ILLNTEDACD DLNLPEFLSS 180 EIELAEFAAD VESLLGSGED EQSNTQLLNA GVEDNKGIKI EVEDEEMRAV VACHLDPELD 240 IKWNFDDYYE ETVKRKAVAV TEFVTSAEYS GSSTKADEKR RLFLRLNHEA VISAWSNQSS 300 PWTNGIRPDD CWPDFPETFG GNQGYYGGQA RRSDGGREAR VSRYREKRRT RLFSKKIRYE 360 HPLVDYVAEN NG

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MSSESKMANA IGGKTARACD SCLSKRARWF CPADDAFLCQ SCDVSVHSAN QLASRHERVR  60
LETSSNKSTK FVDKTHQPAW HQGFTRKART PRNGKKAQIG QRKKGEENRV PEIGCEENSP  120
DENEFENEEQ LLYQVPVFDS FEAELCNVPD ETGNDITDLD ILLNTEDACD DLNLPEFLSS  180
EIELAEFAAD VESLLGSGED EQSNTQLLNA GVEDNKGIKI EVEDEEMRAV VACHLDPELD  240
IKWNFDDYYE ETVKRKAVAV TEFVTSAEYS GSSTKADEKR RLFLRLNHEA VISAWSNQSS  300
PWTNGIRPDD CWPDFPETFG GNQGYYGGQA RRSDGGREAR VSRYREKRRT RLFSKKIRYE  360
HPLVDYVAEN NG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006341612.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBL	M1A433	0.0	M1A433_SOLTU; B-box zinc finger protein 14
STRING	PGSC0003DMT400014362	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1539	24	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	5e-80	B-box type zinc finger protein with CCT domain