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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_05202.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | CO-like | ||||||||
Protein Properties | Length: 372aa MW: 42073.3 Da PI: 4.6195 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 29.2 | 2e-09 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k++++fC ++ +lC++C ++ H+ H++v Sme2.5_05202.1_g00004.1 16 ARACDSCLSKRARWFCPADDAFLCQSCDVSVHSAnqlasrHERV 59 578*****************************667888888876 PP | |||||||
2 | CCT | 29.5 | 2.6e-11 | 337 | 360 | 1 | 24 |
CCT 1 ReaallRYkeKrktRkFeKkirYe 24 Rea+++RY+eKr+tR+F+KkirYe Sme2.5_05202.1_g00004.1 337 REARVSRYREKRRTRLFSKKIRYE 360 9**********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 7.8E-12 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.964 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.3E-8 | 16 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.65E-11 | 17 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MSSESKMANA IGGKTARACD SCLSKRARWF CPADDAFLCQ SCDVSVHSAN QLASRHERVR 60 LETSSNKSTK FVDKTHQPAW HQGFTRKART PRNGKKAQIG QRKKGEENRV PEIGCEENSP 120 DENEFENEEQ LLYQVPVFDS FEAELCNVPD ETGNDITDLD ILLNTEDACD DLNLPEFLSS 180 EIELAEFAAD VESLLGSGED EQSNTQLLNA GVEDNKGIKI EVEDEEMRAV VACHLDPELD 240 IKWNFDDYYE ETVKRKAVAV TEFVTSAEYS GSSTKADEKR RLFLRLNHEA VISAWSNQSS 300 PWTNGIRPDD CWPDFPETFG GNQGYYGGQA RRSDGGREAR VSRYREKRRT RLFSKKIRYE 360 HPLVDYVAEN NG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006341612.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | M1A433 | 0.0 | M1A433_SOLTU; B-box zinc finger protein 14 | ||||
STRING | PGSC0003DMT400014362 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1539 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68520.1 | 5e-80 | B-box type zinc finger protein with CCT domain |