PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04778.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19826.5 Da    PI: 9.4313
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04778.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.72.7e-121659245
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             +ie +   + +fskRr+g+ KKA+EL   C++++ ++ fs+tg+
  Sme2.5_04778.1_g00001.1 16 KIEKQDHLYASFSKRREGLYKKASELVFECGVDIGMLFFSPTGN 59
                             5788888899********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-16766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.371767IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-20877IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-9929IPR002100Transcription factor, MADS-box
PfamPF003191.9E-171663IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-92944IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-94465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MVSKKSKGRR KIPMRKIEKQ DHLYASFSKR REGLYKKASE LVFECGVDIG MLFFSPTGNP  60
FSFFHPNADA VVSRFQNPDI ELSKSSLLVA ARNRETTNEL KSKLDELETI EGAATAKKKF  120
FDQVIEARQE GWWESIEQLN AYEVNKFEAW INTIVFNLQN RLNDLKNDTP ST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164373.12e-87PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1DMK55e-86M1DMK5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000914288e-87(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-27AGAMOUS-like 61