PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03876.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 284aa MW: 32609.3 Da PI: 6.7165

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03876.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.9	3.4e-48	6	132	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 pGfrFhPt+eelv +yLk+kv gkkl+ +vi ++iy+++PwdLp ++ +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+ Sme2.5_03876.1_g00003.1 6 PGFRFHPTEEELVEFYLKNKVLGKKLRG-DVIGVLNIYRHDPWDLPGLATIGEREWYFFVPRDRKHGSGGRPNRTTQKGFWKATGS 90 9************************9.99***********8777899***************************** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++ ++ +glkktLvfy+grap+g+ktdWvm+e+rl Sme2.5_03876.1_g00003.1 91 DKKIFGLshPKSMIGLKKTLVFYTGRAPRGSKTDWVMNEFRL 132 976556778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	54.129	4	151	IPR003441	NAC domain
SuperFamily	SSF101941	6.8E-56	5	151	IPR003441	NAC domain
Pfam	PF02365	7.2E-27	6	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MEVDLPGFRF HPTEEELVEF YLKNKVLGKK LRGDVIGVLN IYRHDPWDLP GLATIGEREW 60 YFFVPRDRKH GSGGRPNRTT QKGFWKATGS DKKIFGLSHP KSMIGLKKTL VFYTGRAPRG 120 SKTDWVMNEF RLPDTYSVPH HDIVLCKIYR KATPLKVLEQ RAAIEEEMNT TKHVDYGSPC 180 SITQPTDTMS FCSELMAASI TDQSSEFLMP IAKDEVEDDI LSITENNVYQ VSAEIKGKTN 240 CYELAELQVP KFNMDFSQDP IWMQLRSPWL DNFCLTPSAF VHNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-48	6	151	17	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016544591.1	1e-174	PREDICTED: NAC domain-containing protein 67
Swissprot	Q10S65	1e-97	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A1U8EDX1	1e-173	A0A1U8EDX1_CAPAN; NAC domain-containing protein 2
TrEMBL	A0A2G2YKB6	1e-173	A0A2G2YKB6_CAPAN; NAC domain-containing protein 67
STRING	PGSC0003DMT400028190	1e-166	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3531	22	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	2e-99	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]