PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02771.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 89aa MW: 9544.32 Da PI: 9.357 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.4 | 5.8e-09 | 11 | 27 | 11 | 27 |
GTS--TTTTT-SS-SSS CS zf-CCCH 11 rtGtCkyGdrCkFaHgp 27 +G+Ck+G++CkF H++ Sme2.5_02771.1_g00009.1 11 LSGFCKFGSSCKFDHPM 27 58*************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.418 | 5 | 28 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 6 | 25 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-5 | 6 | 29 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-6 | 9 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MMLLDCLKVL LSGFCKFGSS CKFDHPMGTV QYNSSASSLP DLPIAPYMLR SSFTLAPMLL 60 PDLQAGFVSG SKVFRSAVVK SGSPPLNLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 6e-60 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 6e-60 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006359420.1 | 1e-31 | PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2 | ||||
Refseq | XP_009776617.1 | 1e-31 | PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2 | ||||
Refseq | XP_016506830.1 | 1e-31 | PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2 | ||||
Refseq | XP_016507418.1 | 1e-31 | PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2 | ||||
Refseq | XP_018633466.1 | 1e-31 | PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X2 | ||||
Swissprot | Q84W91 | 2e-14 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | M1AT36 | 1e-31 | M1AT36_SOLTU; Uncharacterized protein | ||||
STRING | Solyc09g074640.2.1 | 7e-31 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400029603 | 5e-31 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 6e-17 | C3H family protein |